Hb_000495_060

Information

Type -
Description -
Location Contig495: 122244-127308
Sequence    

Annotation

kegg
ID rcu:RCOM_1537760
description Osmotin precursor, putative
nr
ID XP_002519620.1
description Osmotin precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0V1
description Osmotin, putative OS=Ricinus communis GN=RCOM_1537760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45431: 120935-123921 , PASA_asmbl_45432: 120937-123921 , PASA_asmbl_45433: 120937-123921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000495_060 0.0 - - Osmotin precursor, putative [Ricinus communis]
2 Hb_000965_010 0.179751126 - - hypothetical protein VITISV_016917 [Vitis vinifera]
3 Hb_014967_010 0.2093137479 - - -
4 Hb_159404_010 0.211417747 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_020400_010 0.2116543132 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
6 Hb_008755_020 0.2219633711 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_110782_010 0.225079509 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
8 Hb_056506_080 0.2314208429 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_022793_010 0.2389093237 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
10 Hb_002800_020 0.2396110519 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002733_050 0.2437443926 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_114121_010 0.2438719692 - - -
13 Hb_000167_070 0.2448597601 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
14 Hb_006120_160 0.2531315397 - - -
15 Hb_000685_090 0.2535671451 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
16 Hb_101034_010 0.2549659891 - - -
17 Hb_000060_070 0.2561139401 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
18 Hb_166631_010 0.2561161388 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
19 Hb_005432_020 0.2566445962 - - -
20 Hb_181013_010 0.258536601 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]

Gene co-expression network

sample Hb_000495_060 Hb_000495_060 Hb_000965_010 Hb_000965_010 Hb_000495_060--Hb_000965_010 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_000685_090 Hb_000685_090 Hb_000965_010--Hb_000685_090 Hb_022793_010 Hb_022793_010 Hb_000965_010--Hb_022793_010 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_187024_090 Hb_187024_090 Hb_000965_010--Hb_187024_090 Hb_000060_070 Hb_000060_070 Hb_000965_010--Hb_000060_070 Hb_014967_010--Hb_159404_010 Hb_014967_010--Hb_020400_010 Hb_014967_010--Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_014967_010--Hb_056506_080 Hb_014967_010--Hb_110782_010 Hb_000167_070 Hb_000167_070 Hb_014967_010--Hb_000167_070 Hb_159404_010--Hb_020400_010 Hb_159404_010--Hb_008755_020 Hb_159404_010--Hb_056506_080 Hb_159404_010--Hb_110782_010 Hb_159404_010--Hb_000167_070 Hb_020400_010--Hb_110782_010 Hb_020400_010--Hb_008755_020 Hb_002733_050 Hb_002733_050 Hb_020400_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_020400_010--Hb_114121_010 Hb_008755_020--Hb_056506_080 Hb_008755_020--Hb_114121_010 Hb_006120_160 Hb_006120_160 Hb_008755_020--Hb_006120_160 Hb_179183_010 Hb_179183_010 Hb_008755_020--Hb_179183_010 Hb_101034_010 Hb_101034_010 Hb_008755_020--Hb_101034_010 Hb_110782_010--Hb_002733_050 Hb_006013_030 Hb_006013_030 Hb_110782_010--Hb_006013_030 Hb_169514_010 Hb_169514_010 Hb_110782_010--Hb_169514_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.258488 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.220376 0 0.691923 1.45054

CAGE analysis