Hb_100288_010

Information

Type -
Description -
Location Contig100288: 10-759
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100288_010 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_014548_030 0.2142420473 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
3 Hb_005396_060 0.2428391208 - - -
4 Hb_012305_110 0.2437687638 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
5 Hb_012305_090 0.2507457131 - - hypothetical protein VITISV_018166 [Vitis vinifera]
6 Hb_003362_020 0.254060275 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
7 Hb_004987_030 0.2544551585 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_154726_010 0.2545599299 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_008092_080 0.2612378061 - - elongation factor ts, putative [Ricinus communis]
10 Hb_003944_020 0.261688461 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
11 Hb_041813_050 0.2624203507 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
12 Hb_001341_020 0.2626040105 - - Uncharacterised protein [Bordetella pertussis]
13 Hb_000268_100 0.2657966334 - - -
14 Hb_148593_010 0.2754176528 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
15 Hb_033908_010 0.2776751468 - - -
16 Hb_007037_010 0.2786833322 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
17 Hb_003375_050 0.2800183521 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000711_020 0.2811540875 - - major allergen Pru ar 1-like [Jatropha curcas]
19 Hb_004650_060 0.2843266938 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_000529_140 0.285100525 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_100288_010 Hb_100288_010 Hb_014548_030 Hb_014548_030 Hb_100288_010--Hb_014548_030 Hb_005396_060 Hb_005396_060 Hb_100288_010--Hb_005396_060 Hb_012305_110 Hb_012305_110 Hb_100288_010--Hb_012305_110 Hb_012305_090 Hb_012305_090 Hb_100288_010--Hb_012305_090 Hb_003362_020 Hb_003362_020 Hb_100288_010--Hb_003362_020 Hb_004987_030 Hb_004987_030 Hb_100288_010--Hb_004987_030 Hb_014548_030--Hb_012305_090 Hb_000711_020 Hb_000711_020 Hb_014548_030--Hb_000711_020 Hb_148593_010 Hb_148593_010 Hb_014548_030--Hb_148593_010 Hb_003805_070 Hb_003805_070 Hb_014548_030--Hb_003805_070 Hb_014548_030--Hb_012305_110 Hb_001341_020 Hb_001341_020 Hb_005396_060--Hb_001341_020 Hb_005396_060--Hb_012305_090 Hb_000022_140 Hb_000022_140 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_102602_030 Hb_102602_030 Hb_012305_110--Hb_102602_030 Hb_000076_050 Hb_000076_050 Hb_012305_110--Hb_000076_050 Hb_171685_040 Hb_171685_040 Hb_012305_110--Hb_171685_040 Hb_005656_150 Hb_005656_150 Hb_012305_110--Hb_005656_150 Hb_102602_010 Hb_102602_010 Hb_012305_110--Hb_102602_010 Hb_086607_010 Hb_086607_010 Hb_012305_090--Hb_086607_010 Hb_012305_090--Hb_001341_020 Hb_012305_090--Hb_000711_020 Hb_115656_010 Hb_115656_010 Hb_012305_090--Hb_115656_010 Hb_062192_060 Hb_062192_060 Hb_003362_020--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_003362_020--Hb_041813_050 Hb_088080_030 Hb_088080_030 Hb_003362_020--Hb_088080_030 Hb_062273_010 Hb_062273_010 Hb_003362_020--Hb_062273_010 Hb_003362_020--Hb_004987_030 Hb_072212_020 Hb_072212_020 Hb_003362_020--Hb_072212_020 Hb_000012_440 Hb_000012_440 Hb_004987_030--Hb_000012_440 Hb_000699_080 Hb_000699_080 Hb_004987_030--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_004987_030--Hb_006925_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0591461 0.0255449 0.0276061 0.121951 0.216806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.073589 0 0.208015 0.234739 1.26892

CAGE analysis