Hb_014548_030

Information

Type -
Description -
Location Contig14548: 44135-46140
Sequence    

Annotation

kegg
ID bvg:104897580
description uncharacterized LOC104897580
nr
ID XP_010682794.1
description PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014548_030 0.0 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
2 Hb_012305_090 0.1753936708 - - hypothetical protein VITISV_018166 [Vitis vinifera]
3 Hb_000711_020 0.1973489017 - - major allergen Pru ar 1-like [Jatropha curcas]
4 Hb_100288_010 0.2142420473 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
5 Hb_148593_010 0.2686926685 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
6 Hb_003805_070 0.2705728466 - - PREDICTED: sacsin [Jatropha curcas]
7 Hb_012305_110 0.2805320246 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
8 Hb_000076_050 0.2820452771 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
9 Hb_005396_060 0.2840592104 - - -
10 Hb_086607_010 0.2850914784 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_003362_020 0.285345677 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
12 Hb_000518_040 0.2927214051 - - -
13 Hb_007193_050 0.2928992512 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_008092_080 0.2963160906 - - elongation factor ts, putative [Ricinus communis]
15 Hb_132317_010 0.2991187211 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_057451_040 0.3053263854 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_006569_050 0.3094773819 - - -
18 Hb_000268_100 0.3105800346 - - -
19 Hb_002888_080 0.310751068 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
20 Hb_003406_030 0.3110679065 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]

Gene co-expression network

sample Hb_014548_030 Hb_014548_030 Hb_012305_090 Hb_012305_090 Hb_014548_030--Hb_012305_090 Hb_000711_020 Hb_000711_020 Hb_014548_030--Hb_000711_020 Hb_100288_010 Hb_100288_010 Hb_014548_030--Hb_100288_010 Hb_148593_010 Hb_148593_010 Hb_014548_030--Hb_148593_010 Hb_003805_070 Hb_003805_070 Hb_014548_030--Hb_003805_070 Hb_012305_110 Hb_012305_110 Hb_014548_030--Hb_012305_110 Hb_086607_010 Hb_086607_010 Hb_012305_090--Hb_086607_010 Hb_005396_060 Hb_005396_060 Hb_012305_090--Hb_005396_060 Hb_001341_020 Hb_001341_020 Hb_012305_090--Hb_001341_020 Hb_012305_090--Hb_000711_020 Hb_115656_010 Hb_115656_010 Hb_012305_090--Hb_115656_010 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_049275_010 Hb_049275_010 Hb_000711_020--Hb_049275_010 Hb_001446_010 Hb_001446_010 Hb_000711_020--Hb_001446_010 Hb_000711_020--Hb_086607_010 Hb_100288_010--Hb_005396_060 Hb_100288_010--Hb_012305_110 Hb_100288_010--Hb_012305_090 Hb_003362_020 Hb_003362_020 Hb_100288_010--Hb_003362_020 Hb_004987_030 Hb_004987_030 Hb_100288_010--Hb_004987_030 Hb_148593_010--Hb_003805_070 Hb_006452_240 Hb_006452_240 Hb_148593_010--Hb_006452_240 Hb_148593_010--Hb_001341_020 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_148593_010--Hb_011616_020 Hb_005523_010 Hb_005523_010 Hb_148593_010--Hb_005523_010 Hb_003805_070--Hb_006452_240 Hb_003805_070--Hb_005523_010 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_001912_080 Hb_001912_080 Hb_003805_070--Hb_001912_080 Hb_102602_030 Hb_102602_030 Hb_012305_110--Hb_102602_030 Hb_000076_050 Hb_000076_050 Hb_012305_110--Hb_000076_050 Hb_171685_040 Hb_171685_040 Hb_012305_110--Hb_171685_040 Hb_005656_150 Hb_005656_150 Hb_012305_110--Hb_005656_150 Hb_102602_010 Hb_102602_010 Hb_012305_110--Hb_102602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0502516 0.0082 0 0.0517888 0.0733859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0354981 0.0522275 0.276893

CAGE analysis