Hb_012305_090

Information

Type -
Description -
Location Contig12305: 45944-49558
Sequence    

Annotation

kegg
ID gmx:102665580
description uncharacterized LOC102665580
nr
ID CAN66553.1
description hypothetical protein VITISV_018166 [Vitis vinifera]
swissprot
ID Q9UR07
description Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1
trembl
ID A5CAG1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1
Gene Ontology
ID GO:0003824
description rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_090 0.0 - - hypothetical protein VITISV_018166 [Vitis vinifera]
2 Hb_086607_010 0.1702475328 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_005396_060 0.1715589649 - - -
4 Hb_014548_030 0.1753936708 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
5 Hb_001341_020 0.2130264863 - - Uncharacterised protein [Bordetella pertussis]
6 Hb_000711_020 0.2163490904 - - major allergen Pru ar 1-like [Jatropha curcas]
7 Hb_115656_010 0.2473151866 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
8 Hb_148593_010 0.2498590437 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
9 Hb_003805_070 0.2505689211 - - PREDICTED: sacsin [Jatropha curcas]
10 Hb_100288_010 0.2507457131 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_002888_080 0.2512809862 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
12 Hb_002729_020 0.2583299724 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
13 Hb_003362_020 0.263707386 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
14 Hb_006452_240 0.2680980709 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
15 Hb_000300_310 0.2729307332 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
16 Hb_012092_080 0.2739001799 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
17 Hb_131872_010 0.2741751569 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_087161_010 0.2745686903 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001282_030 0.2746106339 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
20 Hb_005523_010 0.2748714902 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012305_090 Hb_012305_090 Hb_086607_010 Hb_086607_010 Hb_012305_090--Hb_086607_010 Hb_005396_060 Hb_005396_060 Hb_012305_090--Hb_005396_060 Hb_014548_030 Hb_014548_030 Hb_012305_090--Hb_014548_030 Hb_001341_020 Hb_001341_020 Hb_012305_090--Hb_001341_020 Hb_000711_020 Hb_000711_020 Hb_012305_090--Hb_000711_020 Hb_115656_010 Hb_115656_010 Hb_012305_090--Hb_115656_010 Hb_086607_010--Hb_005396_060 Hb_024411_010 Hb_024411_010 Hb_086607_010--Hb_024411_010 Hb_001282_030 Hb_001282_030 Hb_086607_010--Hb_001282_030 Hb_002729_020 Hb_002729_020 Hb_086607_010--Hb_002729_020 Hb_086607_010--Hb_000711_020 Hb_005396_060--Hb_001341_020 Hb_000022_140 Hb_000022_140 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_014548_030--Hb_000711_020 Hb_100288_010 Hb_100288_010 Hb_014548_030--Hb_100288_010 Hb_148593_010 Hb_148593_010 Hb_014548_030--Hb_148593_010 Hb_003805_070 Hb_003805_070 Hb_014548_030--Hb_003805_070 Hb_012305_110 Hb_012305_110 Hb_014548_030--Hb_012305_110 Hb_001341_020--Hb_002226_050 Hb_001341_020--Hb_006452_240 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_001341_020--Hb_148593_010 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_049275_010 Hb_049275_010 Hb_000711_020--Hb_049275_010 Hb_001446_010 Hb_001446_010 Hb_000711_020--Hb_001446_010 Hb_057451_040 Hb_057451_040 Hb_115656_010--Hb_057451_040 Hb_115656_010--Hb_001282_030 Hb_004212_040 Hb_004212_040 Hb_115656_010--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_115656_010--Hb_002025_090 Hb_012092_080 Hb_012092_080 Hb_115656_010--Hb_012092_080 Hb_142570_010 Hb_142570_010 Hb_115656_010--Hb_142570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00775797 0.0728901 0.0229903 0 0.0222886 0.071909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0528288 0.121038 0.323976

CAGE analysis