Hb_049275_010

Information

Type -
Description -
Location Contig49275: 11-1575
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25470g
description POPTRDRAFT_763341; hypothetical protein
nr
ID XP_011019610.1
description PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H8Y9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25470g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049275_010 0.0 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
2 Hb_005396_060 0.227973885 - - -
3 Hb_012092_080 0.231695367 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
4 Hb_000022_140 0.2349044422 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
5 Hb_066487_010 0.237209767 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006569_050 0.2404055857 - - -
7 Hb_003944_020 0.2413688107 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
8 Hb_052689_010 0.2453267935 - - heat shock cognate protein [Solanum commersonii]
9 Hb_085083_020 0.2460444988 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
10 Hb_000711_020 0.2471465045 - - major allergen Pru ar 1-like [Jatropha curcas]
11 Hb_002791_020 0.2478025122 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
12 Hb_174473_010 0.2528881628 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
13 Hb_003805_070 0.2567868103 - - PREDICTED: sacsin [Jatropha curcas]
14 Hb_005523_010 0.2646269559 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
15 Hb_000529_140 0.2658911933 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003805_060 0.2677237043 - - protein binding protein, putative [Ricinus communis]
17 Hb_004244_010 0.2682035383 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
18 Hb_146339_010 0.2688278684 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
19 Hb_063943_010 0.2689483842 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
20 Hb_001446_010 0.2705803537 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_049275_010 Hb_049275_010 Hb_005396_060 Hb_005396_060 Hb_049275_010--Hb_005396_060 Hb_012092_080 Hb_012092_080 Hb_049275_010--Hb_012092_080 Hb_000022_140 Hb_000022_140 Hb_049275_010--Hb_000022_140 Hb_066487_010 Hb_066487_010 Hb_049275_010--Hb_066487_010 Hb_006569_050 Hb_006569_050 Hb_049275_010--Hb_006569_050 Hb_003944_020 Hb_003944_020 Hb_049275_010--Hb_003944_020 Hb_001341_020 Hb_001341_020 Hb_005396_060--Hb_001341_020 Hb_012305_090 Hb_012305_090 Hb_005396_060--Hb_012305_090 Hb_005396_060--Hb_000022_140 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_097021_010 Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_041813_050 Hb_041813_050 Hb_012092_080--Hb_041813_050 Hb_001523_030 Hb_001523_030 Hb_012092_080--Hb_001523_030 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_001282_030 Hb_001282_030 Hb_012092_080--Hb_001282_030 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_003186_040 Hb_003186_040 Hb_000022_140--Hb_003186_040 Hb_000022_140--Hb_001341_020 Hb_012098_070 Hb_012098_070 Hb_066487_010--Hb_012098_070 Hb_020665_010 Hb_020665_010 Hb_066487_010--Hb_020665_010 Hb_001005_050 Hb_001005_050 Hb_066487_010--Hb_001005_050 Hb_007820_010 Hb_007820_010 Hb_066487_010--Hb_007820_010 Hb_003467_030 Hb_003467_030 Hb_066487_010--Hb_003467_030 Hb_006274_050 Hb_006274_050 Hb_066487_010--Hb_006274_050 Hb_006569_050--Hb_005523_010 Hb_002374_250 Hb_002374_250 Hb_006569_050--Hb_002374_250 Hb_000705_250 Hb_000705_250 Hb_006569_050--Hb_000705_250 Hb_006569_050--Hb_000529_140 Hb_080761_010 Hb_080761_010 Hb_006569_050--Hb_080761_010 Hb_005754_030 Hb_005754_030 Hb_006569_050--Hb_005754_030 Hb_003944_020--Hb_001341_020 Hb_003944_020--Hb_000022_140 Hb_004650_060 Hb_004650_060 Hb_003944_020--Hb_004650_060 Hb_092650_010 Hb_092650_010 Hb_003944_020--Hb_092650_010 Hb_003944_020--Hb_066487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108119 0.184994 0.0829875 0.202147 0.108978 0.484479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.846949 0.452354 1.30928

CAGE analysis