Hb_005396_060

Information

Type -
Description -
Location Contig5396: 49366-57437
Sequence    

Annotation

kegg
ID bvg:104897056
description uncharacterized LOC104897056
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47759: 55597-55831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_060 0.0 - - -
2 Hb_001341_020 0.1288037073 - - Uncharacterised protein [Bordetella pertussis]
3 Hb_012305_090 0.1715589649 - - hypothetical protein VITISV_018166 [Vitis vinifera]
4 Hb_000022_140 0.1776367815 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
5 Hb_003944_020 0.1988041289 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
6 Hb_006452_240 0.2044314806 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
7 Hb_002226_050 0.2143298362 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
8 Hb_005523_010 0.2148614984 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
9 Hb_003805_070 0.2181155079 - - PREDICTED: sacsin [Jatropha curcas]
10 Hb_086607_010 0.2220119785 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_000300_310 0.2224229972 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
12 Hb_003186_040 0.2244515156 - - PREDICTED: protein DENND6A [Jatropha curcas]
13 Hb_000529_140 0.2268351705 - - conserved hypothetical protein [Ricinus communis]
14 Hb_049275_010 0.227973885 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
15 Hb_006569_050 0.2313227008 - - -
16 Hb_022958_010 0.235493665 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
17 Hb_148593_010 0.2356012394 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
18 Hb_173808_010 0.2356061844 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
19 Hb_012092_080 0.2389363146 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
20 Hb_100288_010 0.2428391208 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_005396_060 Hb_005396_060 Hb_001341_020 Hb_001341_020 Hb_005396_060--Hb_001341_020 Hb_012305_090 Hb_012305_090 Hb_005396_060--Hb_012305_090 Hb_000022_140 Hb_000022_140 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_001341_020--Hb_006452_240 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_086607_010 Hb_086607_010 Hb_012305_090--Hb_086607_010 Hb_014548_030 Hb_014548_030 Hb_012305_090--Hb_014548_030 Hb_012305_090--Hb_001341_020 Hb_000711_020 Hb_000711_020 Hb_012305_090--Hb_000711_020 Hb_115656_010 Hb_115656_010 Hb_012305_090--Hb_115656_010 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_003186_040 Hb_003186_040 Hb_000022_140--Hb_003186_040 Hb_003944_020--Hb_001341_020 Hb_003944_020--Hb_000022_140 Hb_004650_060 Hb_004650_060 Hb_003944_020--Hb_004650_060 Hb_092650_010 Hb_092650_010 Hb_003944_020--Hb_092650_010 Hb_066487_010 Hb_066487_010 Hb_003944_020--Hb_066487_010 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.024726 0.0900586 0.0571538 0.0186959 0.0239614 0.128774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0281405 0 0.125202 0.247155 0.46485

CAGE analysis