Hb_012305_110

Information

Type -
Description -
Location Contig12305: 75150-79552
Sequence    

Annotation

kegg
ID bvg:104897713
description uncharacterized LOC104897713
nr
ID XP_011070841.1
description PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
swissprot
ID P92519
description Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
trembl
ID A0A061ECQ0
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao GN=TCM_009535 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07016: 67313-74295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_110 0.0 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
2 Hb_102602_030 0.2400990568 - - hypothetical protein (mitochondrion) [Vicia faba]
3 Hb_100288_010 0.2437687638 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_000076_050 0.2579372044 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
5 Hb_171685_040 0.2600741987 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
6 Hb_005656_150 0.2712810932 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_102602_010 0.2713834252 - - orf175 (mitochondrion) [Panax ginseng]
8 Hb_000159_020 0.2759532392 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
9 Hb_003362_020 0.2788969151 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
10 Hb_014548_030 0.2805320246 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
11 Hb_000268_100 0.2806283925 - - -
12 Hb_032733_010 0.2960036296 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
13 Hb_004987_030 0.2967582309 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_171685_030 0.2976257811 - - URF-1 [Citrullus lanatus]
15 Hb_041813_010 0.2993320905 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005742_010 0.30015021 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_003125_100 0.3012295934 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
18 Hb_006040_050 0.3037907447 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006040_160 0.3039160911 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
20 Hb_027357_010 0.3056337815 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_012305_110 Hb_012305_110 Hb_102602_030 Hb_102602_030 Hb_012305_110--Hb_102602_030 Hb_100288_010 Hb_100288_010 Hb_012305_110--Hb_100288_010 Hb_000076_050 Hb_000076_050 Hb_012305_110--Hb_000076_050 Hb_171685_040 Hb_171685_040 Hb_012305_110--Hb_171685_040 Hb_005656_150 Hb_005656_150 Hb_012305_110--Hb_005656_150 Hb_102602_010 Hb_102602_010 Hb_012305_110--Hb_102602_010 Hb_102602_030--Hb_171685_040 Hb_102602_030--Hb_102602_010 Hb_171685_030 Hb_171685_030 Hb_102602_030--Hb_171685_030 Hb_027357_010 Hb_027357_010 Hb_102602_030--Hb_027357_010 Hb_062192_030 Hb_062192_030 Hb_102602_030--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_102602_030--Hb_041813_030 Hb_014548_030 Hb_014548_030 Hb_100288_010--Hb_014548_030 Hb_005396_060 Hb_005396_060 Hb_100288_010--Hb_005396_060 Hb_012305_090 Hb_012305_090 Hb_100288_010--Hb_012305_090 Hb_003362_020 Hb_003362_020 Hb_100288_010--Hb_003362_020 Hb_004987_030 Hb_004987_030 Hb_100288_010--Hb_004987_030 Hb_041813_010 Hb_041813_010 Hb_000076_050--Hb_041813_010 Hb_007520_070 Hb_007520_070 Hb_000076_050--Hb_007520_070 Hb_003327_020 Hb_003327_020 Hb_000076_050--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_000076_050--Hb_000856_320 Hb_000958_100 Hb_000958_100 Hb_000076_050--Hb_000958_100 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_000012_440 Hb_000012_440 Hb_005656_150--Hb_000012_440 Hb_003032_090 Hb_003032_090 Hb_005656_150--Hb_003032_090 Hb_005656_150--Hb_004987_030 Hb_001338_150 Hb_001338_150 Hb_005656_150--Hb_001338_150 Hb_032733_010 Hb_032733_010 Hb_005656_150--Hb_032733_010 Hb_008092_080 Hb_008092_080 Hb_005656_150--Hb_008092_080 Hb_102602_010--Hb_062192_030 Hb_008195_080 Hb_008195_080 Hb_102602_010--Hb_008195_080 Hb_102602_010--Hb_041813_030 Hb_006040_160 Hb_006040_160 Hb_102602_010--Hb_006040_160 Hb_141708_010 Hb_141708_010 Hb_102602_010--Hb_141708_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00863507 0 0.0132574 0.0244728 0.0165502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0296197 0.00618903 0.165095

CAGE analysis