Hb_102602_010

Information

Type -
Description -
Location Contig102602: 6689-7217
Sequence    

Annotation

kegg
ID mtr:MTR_1g005090
description NADH-ubiquinone oxidoreductase chain
nr
ID AHJ81038.1
description orf175 (mitochondrion) [Panax ginseng]
swissprot
ID Q04050
description NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris GN=ND4 PE=3 SV=1
trembl
ID A0A096XFA7
description Orf175 OS=Panax ginseng GN=orf175 PE=4 SV=1
Gene Ontology
ID GO:0005739
description nadh dehydrogenase subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102602_010 0.0 - - orf175 (mitochondrion) [Panax ginseng]
2 Hb_102602_030 0.1437392487 - - hypothetical protein (mitochondrion) [Vicia faba]
3 Hb_062192_030 0.1509563869 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
4 Hb_008195_080 0.1688075502 - - -
5 Hb_041813_030 0.181277357 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
6 Hb_006040_160 0.1826554655 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
7 Hb_141708_010 0.1847548098 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
8 Hb_041813_060 0.1901950975 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
9 Hb_001674_050 0.1903123162 - - cytochrome b6 (chloroplast) [Apios americana]
10 Hb_027357_010 0.192061381 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_003125_100 0.1940751029 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
12 Hb_001338_080 0.196046195 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
13 Hb_171685_040 0.1980299426 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
14 Hb_005154_090 0.1991587619 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000029_380 0.2000526225 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000336_130 0.2044879571 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
17 Hb_063885_010 0.2061623945 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_189099_020 0.2078762911 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
19 Hb_088080_030 0.209924601 - - ribosomal protein S4 [Hevea brasiliensis]
20 Hb_013420_010 0.2133504343 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_102602_010 Hb_102602_010 Hb_102602_030 Hb_102602_030 Hb_102602_010--Hb_102602_030 Hb_062192_030 Hb_062192_030 Hb_102602_010--Hb_062192_030 Hb_008195_080 Hb_008195_080 Hb_102602_010--Hb_008195_080 Hb_041813_030 Hb_041813_030 Hb_102602_010--Hb_041813_030 Hb_006040_160 Hb_006040_160 Hb_102602_010--Hb_006040_160 Hb_141708_010 Hb_141708_010 Hb_102602_010--Hb_141708_010 Hb_171685_040 Hb_171685_040 Hb_102602_030--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_102602_030--Hb_171685_030 Hb_027357_010 Hb_027357_010 Hb_102602_030--Hb_027357_010 Hb_102602_030--Hb_062192_030 Hb_102602_030--Hb_041813_030 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_063885_010 Hb_063885_010 Hb_008195_080--Hb_063885_010 Hb_001081_070 Hb_001081_070 Hb_008195_080--Hb_001081_070 Hb_001674_050 Hb_001674_050 Hb_008195_080--Hb_001674_050 Hb_006331_010 Hb_006331_010 Hb_008195_080--Hb_006331_010 Hb_004138_020 Hb_004138_020 Hb_008195_080--Hb_004138_020 Hb_083242_040 Hb_083242_040 Hb_008195_080--Hb_083242_040 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_006040_160--Hb_041813_030 Hb_006040_160--Hb_042463_070 Hb_006040_160--Hb_077242_020 Hb_006040_160--Hb_001338_080 Hb_006040_160--Hb_141708_010 Hb_141708_010--Hb_001674_050 Hb_141708_010--Hb_001338_080 Hb_182972_020 Hb_182972_020 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0612134 0.0548768 0.281524 0 0.127644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.215034 0.0551025 2.8405

CAGE analysis