Hb_006040_160

Information

Type -
Description -
Location Contig6040: 142796-143703
Sequence    

Annotation

kegg
ID csv:11123865
description rps12, CusaM_p14; ribosomal protein S12
nr
ID BAO50919.1
description ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P68536
description Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1
trembl
ID W6JLR7
description Ribosomal protein S12 OS=Hevea brasiliensis GN=rps12 PE=3 SV=1
Gene Ontology
ID GO:0015935
description ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_160 0.0 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
2 Hb_062192_030 0.131625627 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
3 Hb_041813_030 0.1606376172 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
4 Hb_042463_070 0.1618830261 - - 60S ribosomal protein L16, putative [Ricinus communis]
5 Hb_077242_020 0.1709693456 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
6 Hb_001338_080 0.1728464478 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
7 Hb_141708_010 0.1765248636 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
8 Hb_156746_010 0.1776487461 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
9 Hb_102602_010 0.1826554655 - - orf175 (mitochondrion) [Panax ginseng]
10 Hb_006040_030 0.1842711347 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
11 Hb_001490_020 0.1844839166 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_002551_030 0.1863467337 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
13 Hb_005154_090 0.1871197871 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_027745_010 0.1899937041 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_003915_030 0.1921357307 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
16 Hb_006040_010 0.1957745759 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
17 Hb_027357_010 0.1973598208 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_145745_010 0.1980711636 - - BnaUnng00830D [Brassica napus]
19 Hb_102602_030 0.198219753 - - hypothetical protein (mitochondrion) [Vicia faba]
20 Hb_189099_020 0.1991881674 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_006040_160 Hb_006040_160 Hb_062192_030 Hb_062192_030 Hb_006040_160--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_006040_160--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_006040_160--Hb_042463_070 Hb_077242_020 Hb_077242_020 Hb_006040_160--Hb_077242_020 Hb_001338_080 Hb_001338_080 Hb_006040_160--Hb_001338_080 Hb_141708_010 Hb_141708_010 Hb_006040_160--Hb_141708_010 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_062192_030--Hb_041813_030 Hb_062192_030--Hb_042463_070 Hb_062192_030--Hb_001338_080 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_077242_020--Hb_006040_030 Hb_079902_010 Hb_079902_010 Hb_077242_020--Hb_079902_010 Hb_101462_010 Hb_101462_010 Hb_077242_020--Hb_101462_010 Hb_077242_020--Hb_156746_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_001338_080--Hb_182972_020 Hb_019253_040 Hb_019253_040 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060 Hb_141708_010--Hb_001674_050 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297383 0.580652 0.0346652 1.30463 0.137307 0.947052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211385 0 0.289198 0.511899 20.9515

CAGE analysis