Hb_000613_230

Information

Type -
Description -
Location Contig613: 181190-181576
Sequence    

Annotation

kegg
ID rcu:RCOM_0690850
description hypothetical protein
nr
ID XP_002532200.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P59584
description Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1
trembl
ID B9T1T1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690850 PE=4 SV=1
Gene Ontology
ID GO:0005886
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010366_010 0.2550765886 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_003020_060 0.2638856345 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
4 Hb_001546_160 0.2688980378 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001019_070 0.2811097237 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
6 Hb_021443_030 0.2896032629 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
7 Hb_011242_020 0.2957633769 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_001247_110 0.3044673115 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_006694_030 0.3054976322 - - -
10 Hb_006487_040 0.3147923642 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
11 Hb_000946_080 0.3170665449 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Prunus mume]
12 Hb_000076_090 0.3186513302 - - protein with unknown function [Ricinus communis]
13 Hb_003992_050 0.3192031414 - - delta 9 desaturase, putative [Ricinus communis]
14 Hb_000260_240 0.3193389878 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
15 Hb_028048_020 0.319367703 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_001021_100 0.3195827975 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
17 Hb_000078_090 0.3215297181 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_007218_060 0.3216897754 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
19 Hb_003349_020 0.3230727022 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
20 Hb_005015_020 0.3240186129 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000613_230 Hb_000613_230 Hb_010366_010 Hb_010366_010 Hb_000613_230--Hb_010366_010 Hb_003020_060 Hb_003020_060 Hb_000613_230--Hb_003020_060 Hb_001546_160 Hb_001546_160 Hb_000613_230--Hb_001546_160 Hb_001019_070 Hb_001019_070 Hb_000613_230--Hb_001019_070 Hb_021443_030 Hb_021443_030 Hb_000613_230--Hb_021443_030 Hb_011242_020 Hb_011242_020 Hb_000613_230--Hb_011242_020 Hb_000078_090 Hb_000078_090 Hb_010366_010--Hb_000078_090 Hb_000413_290 Hb_000413_290 Hb_010366_010--Hb_000413_290 Hb_010366_010--Hb_001546_160 Hb_003089_030 Hb_003089_030 Hb_010366_010--Hb_003089_030 Hb_005568_090 Hb_005568_090 Hb_010366_010--Hb_005568_090 Hb_000710_090 Hb_000710_090 Hb_003020_060--Hb_000710_090 Hb_006487_040 Hb_006487_040 Hb_003020_060--Hb_006487_040 Hb_000567_400 Hb_000567_400 Hb_003020_060--Hb_000567_400 Hb_003020_060--Hb_001546_160 Hb_003992_050 Hb_003992_050 Hb_003020_060--Hb_003992_050 Hb_001247_110 Hb_001247_110 Hb_001546_160--Hb_001247_110 Hb_002799_130 Hb_002799_130 Hb_001546_160--Hb_002799_130 Hb_000699_100 Hb_000699_100 Hb_001546_160--Hb_000699_100 Hb_002290_020 Hb_002290_020 Hb_001546_160--Hb_002290_020 Hb_000424_040 Hb_000424_040 Hb_001546_160--Hb_000424_040 Hb_001638_310 Hb_001638_310 Hb_001546_160--Hb_001638_310 Hb_000260_240 Hb_000260_240 Hb_001019_070--Hb_000260_240 Hb_004846_230 Hb_004846_230 Hb_001019_070--Hb_004846_230 Hb_003549_130 Hb_003549_130 Hb_001019_070--Hb_003549_130 Hb_001019_070--Hb_021443_030 Hb_006788_090 Hb_006788_090 Hb_001019_070--Hb_006788_090 Hb_008173_130 Hb_008173_130 Hb_001019_070--Hb_008173_130 Hb_089114_010 Hb_089114_010 Hb_021443_030--Hb_089114_010 Hb_002965_070 Hb_002965_070 Hb_021443_030--Hb_002965_070 Hb_000680_180 Hb_000680_180 Hb_021443_030--Hb_000680_180 Hb_021443_030--Hb_003549_130 Hb_001894_160 Hb_001894_160 Hb_021443_030--Hb_001894_160 Hb_000563_510 Hb_000563_510 Hb_021443_030--Hb_000563_510 Hb_006816_520 Hb_006816_520 Hb_011242_020--Hb_006816_520 Hb_132384_010 Hb_132384_010 Hb_011242_020--Hb_132384_010 Hb_087203_010 Hb_087203_010 Hb_011242_020--Hb_087203_010 Hb_011242_020--Hb_003020_060 Hb_002493_010 Hb_002493_010 Hb_011242_020--Hb_002493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11721 0.602717 1.25094 0 0.175153 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.264349 0.0720197 0.580054

CAGE analysis