Hb_000424_040

Information

Type -
Description -
Location Contig424: 39575-40780
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23700g
description POPTRDRAFT_717001; YGGT family protein
nr
ID XP_012077192.1
description PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
swissprot
ID O31729
description Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain 168) GN=ylmG PE=3 SV=1
trembl
ID A0A067KCS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07597 PE=4 SV=1
Gene Ontology
ID GO:0016020
description yggt family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41893: 39511-40127 , PASA_asmbl_41894: 40252-40806 , PASA_asmbl_41895: 40167-40806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_040 0.0 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
2 Hb_011671_190 0.1613468541 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_000699_100 0.1615644897 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
4 Hb_005147_080 0.1677594125 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000705_250 0.1779501909 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
6 Hb_010344_020 0.1797414205 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
7 Hb_000809_240 0.1816568127 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
8 Hb_189003_060 0.187039636 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000318_130 0.1941876637 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003025_140 0.1967272094 - - conserved hypothetical protein [Ricinus communis]
11 Hb_169209_010 0.1968460312 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
12 Hb_002875_060 0.2016786888 - - hypothetical protein L484_023461 [Morus notabilis]
13 Hb_002498_160 0.2066388701 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
14 Hb_024399_020 0.2069181789 - - electron transporter, putative [Ricinus communis]
15 Hb_000017_350 0.2071671 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
16 Hb_092703_010 0.2098875084 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
17 Hb_001399_010 0.2113343792 - - ATP binding protein, putative [Ricinus communis]
18 Hb_004375_050 0.2125054937 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_167103_010 0.2129260988 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
20 Hb_002290_030 0.2130052594 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000424_040 Hb_000424_040 Hb_011671_190 Hb_011671_190 Hb_000424_040--Hb_011671_190 Hb_000699_100 Hb_000699_100 Hb_000424_040--Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000809_240 Hb_000809_240 Hb_000424_040--Hb_000809_240 Hb_092703_010 Hb_092703_010 Hb_011671_190--Hb_092703_010 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_169209_010 Hb_169209_010 Hb_011671_190--Hb_169209_010 Hb_011671_190--Hb_000809_240 Hb_000699_100--Hb_005147_080 Hb_167103_010 Hb_167103_010 Hb_000699_100--Hb_167103_010 Hb_005016_140 Hb_005016_140 Hb_000699_100--Hb_005016_140 Hb_002660_190 Hb_002660_190 Hb_000699_100--Hb_002660_190 Hb_002290_030 Hb_002290_030 Hb_000699_100--Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_000705_250--Hb_000318_130 Hb_004218_190 Hb_004218_190 Hb_000705_250--Hb_004218_190 Hb_009486_040 Hb_009486_040 Hb_000705_250--Hb_009486_040 Hb_005511_150 Hb_005511_150 Hb_000705_250--Hb_005511_150 Hb_003025_140 Hb_003025_140 Hb_000705_250--Hb_003025_140 Hb_007527_010 Hb_007527_010 Hb_000705_250--Hb_007527_010 Hb_138585_030 Hb_138585_030 Hb_010344_020--Hb_138585_030 Hb_010344_020--Hb_011861_050 Hb_002915_010 Hb_002915_010 Hb_010344_020--Hb_002915_010 Hb_000208_190 Hb_000208_190 Hb_010344_020--Hb_000208_190 Hb_000094_100 Hb_000094_100 Hb_010344_020--Hb_000094_100 Hb_000809_240--Hb_189003_060 Hb_114893_040 Hb_114893_040 Hb_000809_240--Hb_114893_040 Hb_000473_050 Hb_000473_050 Hb_000809_240--Hb_000473_050 Hb_002498_160 Hb_002498_160 Hb_000809_240--Hb_002498_160 Hb_123676_010 Hb_123676_010 Hb_000809_240--Hb_123676_010 Hb_000809_240--Hb_003025_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39159 2.46996 18.3899 4.67377 2.65299 2.65948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82309 2.91829 15.1326 2.91926 22.9795

CAGE analysis