Hb_011671_190

Information

Type -
Description -
Location Contig11671: 165813-167377
Sequence    

Annotation

kegg
ID rcu:RCOM_1501160
description Nodulation receptor kinase precursor, putative
nr
ID XP_002510997.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID P33543
description Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1
trembl
ID B9R9X2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_1501160 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase-like protein tmkl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05146: 165439-168016 , PASA_asmbl_05147: 166495-166701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_190 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_000424_040 0.1613468541 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
3 Hb_092703_010 0.1614468587 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
4 Hb_000699_100 0.2027609636 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
5 Hb_009851_010 0.214930612 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
6 Hb_169209_010 0.2195450888 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
7 Hb_000809_240 0.2235731673 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
8 Hb_003786_080 0.2283177855 - - electron transporter, putative [Ricinus communis]
9 Hb_001711_060 0.2293948124 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
10 Hb_000431_150 0.2305215164 - - ribosomal protein L27, putative [Ricinus communis]
11 Hb_002498_160 0.2340583949 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
12 Hb_002835_160 0.2373564924 - - Kinase superfamily protein [Theobroma cacao]
13 Hb_006847_030 0.2384693888 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
14 Hb_012653_030 0.2427506592 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000017_350 0.2470902513 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
16 Hb_015967_030 0.2471966777 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
17 Hb_189003_060 0.2486150689 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_021576_080 0.2487976175 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
19 Hb_000061_150 0.2494485081 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
20 Hb_001386_090 0.2497391607 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_190 Hb_011671_190 Hb_000424_040 Hb_000424_040 Hb_011671_190--Hb_000424_040 Hb_092703_010 Hb_092703_010 Hb_011671_190--Hb_092703_010 Hb_000699_100 Hb_000699_100 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_169209_010 Hb_169209_010 Hb_011671_190--Hb_169209_010 Hb_000809_240 Hb_000809_240 Hb_011671_190--Hb_000809_240 Hb_000424_040--Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000424_040--Hb_000809_240 Hb_092703_010--Hb_000424_040 Hb_003786_080 Hb_003786_080 Hb_092703_010--Hb_003786_080 Hb_000017_350 Hb_000017_350 Hb_092703_010--Hb_000017_350 Hb_092703_010--Hb_169209_010 Hb_032202_150 Hb_032202_150 Hb_092703_010--Hb_032202_150 Hb_000699_100--Hb_005147_080 Hb_167103_010 Hb_167103_010 Hb_000699_100--Hb_167103_010 Hb_005016_140 Hb_005016_140 Hb_000699_100--Hb_005016_140 Hb_002660_190 Hb_002660_190 Hb_000699_100--Hb_002660_190 Hb_002290_030 Hb_002290_030 Hb_000699_100--Hb_002290_030 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000676_020 Hb_000676_020 Hb_009851_010--Hb_000676_020 Hb_000331_420 Hb_000331_420 Hb_009851_010--Hb_000331_420 Hb_068194_010 Hb_068194_010 Hb_009851_010--Hb_068194_010 Hb_002498_160 Hb_002498_160 Hb_009851_010--Hb_002498_160 Hb_001102_050 Hb_001102_050 Hb_009851_010--Hb_001102_050 Hb_169209_010--Hb_002498_160 Hb_000473_050 Hb_000473_050 Hb_169209_010--Hb_000473_050 Hb_001124_190 Hb_001124_190 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_189003_060 Hb_189003_060 Hb_000809_240--Hb_189003_060 Hb_114893_040 Hb_114893_040 Hb_000809_240--Hb_114893_040 Hb_000809_240--Hb_000473_050 Hb_000809_240--Hb_002498_160 Hb_123676_010 Hb_123676_010 Hb_000809_240--Hb_123676_010 Hb_003025_140 Hb_003025_140 Hb_000809_240--Hb_003025_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459519 0.0629199 2.30836 0.28321 0.12291 0.0936461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143291 0.225324 1.21757 0.319724 1.57578

CAGE analysis