Hb_092703_010

Information

Type -
Description -
Location Contig92703: 354-1989
Sequence    

Annotation

kegg
ID rcu:RCOM_1501160
description Nodulation receptor kinase precursor, putative
nr
ID XP_012090493.1
description PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
swissprot
ID C0LGP9
description Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1
trembl
ID B9R9X2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_1501160 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase-like protein tmkl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62734: 956-1150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092703_010 0.0 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
2 Hb_011671_190 0.1614468587 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_000424_040 0.2098875084 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
4 Hb_003786_080 0.24382378 - - electron transporter, putative [Ricinus communis]
5 Hb_000017_350 0.245861908 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
6 Hb_169209_010 0.2774909549 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
7 Hb_032202_150 0.2782772979 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
8 Hb_002498_160 0.282693041 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
9 Hb_006847_030 0.283226972 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
10 Hb_000011_410 0.2870680443 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029610_010 0.2900305519 - - caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
12 Hb_003813_180 0.2901046103 - - sterol desaturase, putative [Ricinus communis]
13 Hb_000454_040 0.2923529022 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_000809_240 0.2923534285 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
15 Hb_001711_060 0.2933108604 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
16 Hb_009851_010 0.2934518507 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
17 Hb_004236_040 0.2937432849 - - biotin carboxyl carrier protein [Vernicia fordii]
18 Hb_000699_100 0.2958734536 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
19 Hb_001124_190 0.2962479251 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000431_150 0.2981843787 - - ribosomal protein L27, putative [Ricinus communis]

Gene co-expression network

sample Hb_092703_010 Hb_092703_010 Hb_011671_190 Hb_011671_190 Hb_092703_010--Hb_011671_190 Hb_000424_040 Hb_000424_040 Hb_092703_010--Hb_000424_040 Hb_003786_080 Hb_003786_080 Hb_092703_010--Hb_003786_080 Hb_000017_350 Hb_000017_350 Hb_092703_010--Hb_000017_350 Hb_169209_010 Hb_169209_010 Hb_092703_010--Hb_169209_010 Hb_032202_150 Hb_032202_150 Hb_092703_010--Hb_032202_150 Hb_011671_190--Hb_000424_040 Hb_000699_100 Hb_000699_100 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_011671_190--Hb_169209_010 Hb_000809_240 Hb_000809_240 Hb_011671_190--Hb_000809_240 Hb_000424_040--Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000424_040--Hb_000809_240 Hb_000035_210 Hb_000035_210 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_000977_170 Hb_000977_170 Hb_003786_080--Hb_000977_170 Hb_006487_040 Hb_006487_040 Hb_003786_080--Hb_006487_040 Hb_000802_050 Hb_000802_050 Hb_003786_080--Hb_000802_050 Hb_002498_160 Hb_002498_160 Hb_000017_350--Hb_002498_160 Hb_000789_120 Hb_000789_120 Hb_000017_350--Hb_000789_120 Hb_000017_350--Hb_169209_010 Hb_001124_190 Hb_001124_190 Hb_000017_350--Hb_001124_190 Hb_121089_040 Hb_121089_040 Hb_000017_350--Hb_121089_040 Hb_000473_050 Hb_000473_050 Hb_000017_350--Hb_000473_050 Hb_169209_010--Hb_002498_160 Hb_169209_010--Hb_000473_050 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_001545_070 Hb_001545_070 Hb_032202_150--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_032202_150--Hb_007943_060 Hb_022250_020 Hb_022250_020 Hb_032202_150--Hb_022250_020 Hb_002475_080 Hb_002475_080 Hb_032202_150--Hb_002475_080 Hb_001287_010 Hb_001287_010 Hb_032202_150--Hb_001287_010 Hb_009707_030 Hb_009707_030 Hb_032202_150--Hb_009707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354863 0 2.18439 0.478915 0.379979 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0.178612 1.54276 0.184054 1.70526

CAGE analysis