Hb_000789_120

Information

Type -
Description -
Location Contig789: 59874-63555
Sequence    

Annotation

kegg
ID cic:CICLE_v10009327mg
description hypothetical protein
nr
ID XP_012076838.1
description PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZU9
description Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1
trembl
ID A0A067KC43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07347 PE=4 SV=1
Gene Ontology
ID GO:0006457
description derlin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58216: 59907-63411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_120 0.0 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
2 Hb_001663_040 0.1070097978 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
3 Hb_121089_040 0.1104189222 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
4 Hb_000116_130 0.1393038753 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
5 Hb_000049_180 0.1406988982 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
6 Hb_001946_380 0.1421836399 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
7 Hb_001976_030 0.146367265 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
8 Hb_003581_290 0.1483013439 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
9 Hb_000017_350 0.1495759891 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
10 Hb_003875_030 0.1497258685 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
11 Hb_097495_010 0.1513092171 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
12 Hb_021943_090 0.1554629899 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
13 Hb_002876_270 0.1558601444 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
14 Hb_003994_030 0.1576540616 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
15 Hb_002174_040 0.1615805974 - - DNAJ heat shock family protein [Theobroma cacao]
16 Hb_005725_220 0.163308082 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
17 Hb_006829_060 0.1633376442 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
18 Hb_011606_020 0.1635261753 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
19 Hb_062522_010 0.1636913424 - - -
20 Hb_001124_180 0.1639798615 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]

Gene co-expression network

sample Hb_000789_120 Hb_000789_120 Hb_001663_040 Hb_001663_040 Hb_000789_120--Hb_001663_040 Hb_121089_040 Hb_121089_040 Hb_000789_120--Hb_121089_040 Hb_000116_130 Hb_000116_130 Hb_000789_120--Hb_000116_130 Hb_000049_180 Hb_000049_180 Hb_000789_120--Hb_000049_180 Hb_001946_380 Hb_001946_380 Hb_000789_120--Hb_001946_380 Hb_001976_030 Hb_001976_030 Hb_000789_120--Hb_001976_030 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000181_350 Hb_000181_350 Hb_001663_040--Hb_000181_350 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_012573_050 Hb_012573_050 Hb_001663_040--Hb_012573_050 Hb_001663_040--Hb_000116_130 Hb_121089_040--Hb_001946_380 Hb_121089_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_121089_040--Hb_001628_120 Hb_000816_200 Hb_000816_200 Hb_121089_040--Hb_000816_200 Hb_001195_770 Hb_001195_770 Hb_121089_040--Hb_001195_770 Hb_121089_040--Hb_003875_030 Hb_000116_130--Hb_012573_050 Hb_011606_020 Hb_011606_020 Hb_000116_130--Hb_011606_020 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000107_430 Hb_000107_430 Hb_000116_130--Hb_000107_430 Hb_000049_180--Hb_001976_030 Hb_000049_180--Hb_001628_120 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000096_190 Hb_000096_190 Hb_000049_180--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000049_180--Hb_042083_040 Hb_000622_290 Hb_000622_290 Hb_001946_380--Hb_000622_290 Hb_002762_110 Hb_002762_110 Hb_001946_380--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_001946_380--Hb_171718_010 Hb_001946_380--Hb_000107_430 Hb_001946_380--Hb_003875_030 Hb_001976_030--Hb_001628_120 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_001976_030--Hb_000638_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.859347 0.372617 7.11221 9.60359 2.83264 1.15435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52065 3.86426 6.04803 3.98661 12.2573

CAGE analysis