Hb_000809_240

Information

Type -
Description -
Location Contig809: 203795-207186
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11280g
description POPTRDRAFT_868739; hypothetical protein
nr
ID XP_006380714.1
description hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID K7LN85
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59171: 204618-206219 , PASA_asmbl_59172: 207212-207403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_240 0.0 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
2 Hb_189003_060 0.1406574759 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_114893_040 0.151990715 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
4 Hb_000473_050 0.1590339682 - - chromatin regulatory protein sir2, putative [Ricinus communis]
5 Hb_002498_160 0.1629352339 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
6 Hb_123676_010 0.1655300949 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_003025_140 0.1660821379 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000025_540 0.1739375122 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
9 Hb_169209_010 0.1751914897 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
10 Hb_015531_020 0.1759641716 - - PREDICTED: uncharacterized protein LOC100267182 isoform X2 [Vitis vinifera]
11 Hb_002075_030 0.1762789976 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000058_080 0.1774133659 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_002835_160 0.1775558409 - - Kinase superfamily protein [Theobroma cacao]
14 Hb_163145_030 0.1792122412 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
15 Hb_097495_010 0.18087725 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
16 Hb_024399_020 0.1812705064 - - electron transporter, putative [Ricinus communis]
17 Hb_007441_310 0.1813184475 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
18 Hb_000424_040 0.1816568127 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
19 Hb_002044_020 0.1826397501 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
20 Hb_001390_100 0.1831917863 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000809_240 Hb_000809_240 Hb_189003_060 Hb_189003_060 Hb_000809_240--Hb_189003_060 Hb_114893_040 Hb_114893_040 Hb_000809_240--Hb_114893_040 Hb_000473_050 Hb_000473_050 Hb_000809_240--Hb_000473_050 Hb_002498_160 Hb_002498_160 Hb_000809_240--Hb_002498_160 Hb_123676_010 Hb_123676_010 Hb_000809_240--Hb_123676_010 Hb_003025_140 Hb_003025_140 Hb_000809_240--Hb_003025_140 Hb_189003_060--Hb_000473_050 Hb_005147_080 Hb_005147_080 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_001959_060 Hb_001959_060 Hb_189003_060--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_189003_060--Hb_000684_430 Hb_000480_040 Hb_000480_040 Hb_189003_060--Hb_000480_040 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_114893_040--Hb_189003_060 Hb_011861_050 Hb_011861_050 Hb_114893_040--Hb_011861_050 Hb_114893_040--Hb_000480_040 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_000473_050--Hb_001959_060 Hb_000473_050--Hb_000684_430 Hb_169209_010 Hb_169209_010 Hb_002498_160--Hb_169209_010 Hb_000676_020 Hb_000676_020 Hb_002498_160--Hb_000676_020 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_006905_030 Hb_006905_030 Hb_123676_010--Hb_006905_030 Hb_000984_270 Hb_000984_270 Hb_123676_010--Hb_000984_270 Hb_000608_170 Hb_000608_170 Hb_123676_010--Hb_000608_170 Hb_123676_010--Hb_114893_040 Hb_123676_010--Hb_003025_140 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_003025_140--Hb_011861_050 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.591123 0.182681 3.37542 1.78309 0.149254 0.936303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308858 0.546659 1.64179 1.20352 4.40962

CAGE analysis