Hb_123676_010

Information

Type -
Description -
Location Contig123676: 28-719
Sequence    

Annotation

kegg
ID rcu:RCOM_1116940
description glycine-rich RNA-binding protein, putative
nr
ID XP_002525321.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9LIS2
description Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1
trembl
ID B9SH52
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07211: 2-716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123676_010 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_000809_240 0.1655300949 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
3 Hb_006905_030 0.166763551 - - -
4 Hb_000984_270 0.1697105047 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000608_170 0.1711769696 - - F23N19.4 [Arabidopsis thaliana]
6 Hb_114893_040 0.1715689466 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
7 Hb_003025_140 0.1745210902 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011224_100 0.1788121178 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009486_040 0.1802672909 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003976_020 0.1820297482 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
11 Hb_006846_070 0.1836719904 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
12 Hb_000186_170 0.1837817716 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
13 Hb_007101_080 0.1839377558 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
14 Hb_000878_030 0.1870942809 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_004631_090 0.1882055303 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
16 Hb_000613_010 0.1884210018 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
17 Hb_000705_250 0.1903084069 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
18 Hb_003581_290 0.1913326047 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
19 Hb_006816_470 0.1926749179 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
20 Hb_001946_380 0.1943688441 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_123676_010 Hb_123676_010 Hb_000809_240 Hb_000809_240 Hb_123676_010--Hb_000809_240 Hb_006905_030 Hb_006905_030 Hb_123676_010--Hb_006905_030 Hb_000984_270 Hb_000984_270 Hb_123676_010--Hb_000984_270 Hb_000608_170 Hb_000608_170 Hb_123676_010--Hb_000608_170 Hb_114893_040 Hb_114893_040 Hb_123676_010--Hb_114893_040 Hb_003025_140 Hb_003025_140 Hb_123676_010--Hb_003025_140 Hb_189003_060 Hb_189003_060 Hb_000809_240--Hb_189003_060 Hb_000809_240--Hb_114893_040 Hb_000473_050 Hb_000473_050 Hb_000809_240--Hb_000473_050 Hb_002498_160 Hb_002498_160 Hb_000809_240--Hb_002498_160 Hb_000809_240--Hb_003025_140 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_167103_010 Hb_167103_010 Hb_006905_030--Hb_167103_010 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_006905_030--Hb_114893_040 Hb_001604_120 Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_006846_070 Hb_006846_070 Hb_000984_270--Hb_006846_070 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_005672_020 Hb_005672_020 Hb_000984_270--Hb_005672_020 Hb_000135_030 Hb_000135_030 Hb_000984_270--Hb_000135_030 Hb_000928_010 Hb_000928_010 Hb_000608_170--Hb_000928_010 Hb_000462_090 Hb_000462_090 Hb_000608_170--Hb_000462_090 Hb_005282_020 Hb_005282_020 Hb_000608_170--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000608_170--Hb_002685_060 Hb_114310_110 Hb_114310_110 Hb_000608_170--Hb_114310_110 Hb_000340_150 Hb_000340_150 Hb_000608_170--Hb_000340_150 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_114893_040--Hb_189003_060 Hb_011861_050 Hb_011861_050 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03358 0.0694579 3.40731 2.88668 1.02768 1.93033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.624957 1.4727 3.87165 2.21502 6.95891

CAGE analysis