Hb_000699_100

Information

Type -
Description -
Location Contig699: 74234-76660
Sequence    

Annotation

kegg
ID vvi:100853131
description pentatricopeptide repeat-containing protein At3g62890-like
nr
ID XP_012089311.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
swissprot
ID Q3E6Q1
description Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
trembl
ID A0A067JW20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23532 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54677: 74249-76783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
2 Hb_005147_080 0.1609505053 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000424_040 0.1615644897 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
4 Hb_167103_010 0.1715782704 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_005016_140 0.1718434409 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002660_190 0.1753766591 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
7 Hb_002290_030 0.1785512926 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
8 Hb_000580_150 0.185456875 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
9 Hb_004375_050 0.1861658058 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000318_130 0.1878078624 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000608_170 0.1891200169 - - F23N19.4 [Arabidopsis thaliana]
12 Hb_001438_010 0.1904600062 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
13 Hb_000690_060 0.1925300927 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
14 Hb_010344_020 0.192677901 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
15 Hb_000802_130 0.1948941527 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
16 Hb_189003_060 0.1971262608 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000340_100 0.1983550746 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
18 Hb_002835_160 0.1992496538 - - Kinase superfamily protein [Theobroma cacao]
19 Hb_011861_050 0.2002657828 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
20 Hb_004109_260 0.2022971541 - - hypothetical protein JCGZ_06843 [Jatropha curcas]

Gene co-expression network

sample Hb_000699_100 Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000699_100--Hb_005147_080 Hb_000424_040 Hb_000424_040 Hb_000699_100--Hb_000424_040 Hb_167103_010 Hb_167103_010 Hb_000699_100--Hb_167103_010 Hb_005016_140 Hb_005016_140 Hb_000699_100--Hb_005016_140 Hb_002660_190 Hb_002660_190 Hb_000699_100--Hb_002660_190 Hb_002290_030 Hb_002290_030 Hb_000699_100--Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_011671_190 Hb_011671_190 Hb_000424_040--Hb_011671_190 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_000424_040--Hb_010344_020 Hb_000809_240 Hb_000809_240 Hb_000424_040--Hb_000809_240 Hb_000529_180 Hb_000529_180 Hb_167103_010--Hb_000529_180 Hb_000613_120 Hb_000613_120 Hb_167103_010--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_167103_010--Hb_001438_010 Hb_004109_260 Hb_004109_260 Hb_167103_010--Hb_004109_260 Hb_167103_010--Hb_002660_190 Hb_006905_030 Hb_006905_030 Hb_167103_010--Hb_006905_030 Hb_001454_150 Hb_001454_150 Hb_005016_140--Hb_001454_150 Hb_004871_010 Hb_004871_010 Hb_005016_140--Hb_004871_010 Hb_000976_190 Hb_000976_190 Hb_005016_140--Hb_000976_190 Hb_000194_010 Hb_000194_010 Hb_005016_140--Hb_000194_010 Hb_000061_150 Hb_000061_150 Hb_005016_140--Hb_000061_150 Hb_011310_140 Hb_011310_140 Hb_005016_140--Hb_011310_140 Hb_001427_040 Hb_001427_040 Hb_002660_190--Hb_001427_040 Hb_004108_060 Hb_004108_060 Hb_002660_190--Hb_004108_060 Hb_002282_070 Hb_002282_070 Hb_002660_190--Hb_002282_070 Hb_002660_190--Hb_011861_050 Hb_000345_370 Hb_000345_370 Hb_002660_190--Hb_000345_370 Hb_003475_020 Hb_003475_020 Hb_002660_190--Hb_003475_020 Hb_002290_030--Hb_004375_050 Hb_001629_090 Hb_001629_090 Hb_002290_030--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.338422 0.220051 0.997627 0.0759575 0.140664 0.205042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.182468 0.330235 0.683868 0.228115 1.28095

CAGE analysis