Hb_005016_140

Information

Type -
Description -
Location Contig5016: 140136-142808
Sequence    

Annotation

kegg
ID rcu:RCOM_1355040
description hypothetical protein
nr
ID XP_012082402.1
description PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LVV5
description Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2
trembl
ID A0A067K270
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16537 PE=4 SV=1
Gene Ontology
ID GO:0031977
description thylakoid lumenal kda protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45889: 140178-142738 , PASA_asmbl_45890: 143302-145023 , PASA_asmbl_45891: 143302-145065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_140 0.0 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001454_150 0.1014766142 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
3 Hb_004871_010 0.1163655765 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
4 Hb_000976_190 0.1192030939 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
5 Hb_000194_010 0.1280269796 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
6 Hb_000061_150 0.1368107282 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
7 Hb_011310_140 0.1414923263 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
8 Hb_006787_090 0.1437563842 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
9 Hb_001907_070 0.1453522184 - - 50S ribosomal protein L1p, putative [Ricinus communis]
10 Hb_005147_080 0.1463028372 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_011861_050 0.148068026 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
12 Hb_003376_390 0.1483206015 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
13 Hb_002217_140 0.1497522013 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
14 Hb_000613_120 0.1505841844 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
15 Hb_002997_070 0.1516805759 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
16 Hb_001789_160 0.154541246 - - PREDICTED: putative transporter arsB [Jatropha curcas]
17 Hb_000023_370 0.1547352545 - - -
18 Hb_031042_060 0.1549145466 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_021650_010 0.1553217461 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
20 Hb_001723_030 0.1556489869 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005016_140 Hb_005016_140 Hb_001454_150 Hb_001454_150 Hb_005016_140--Hb_001454_150 Hb_004871_010 Hb_004871_010 Hb_005016_140--Hb_004871_010 Hb_000976_190 Hb_000976_190 Hb_005016_140--Hb_000976_190 Hb_000194_010 Hb_000194_010 Hb_005016_140--Hb_000194_010 Hb_000061_150 Hb_000061_150 Hb_005016_140--Hb_000061_150 Hb_011310_140 Hb_011310_140 Hb_005016_140--Hb_011310_140 Hb_001454_150--Hb_000194_010 Hb_001789_160 Hb_001789_160 Hb_001454_150--Hb_001789_160 Hb_031042_060 Hb_031042_060 Hb_001454_150--Hb_031042_060 Hb_000260_710 Hb_000260_710 Hb_001454_150--Hb_000260_710 Hb_001454_150--Hb_004871_010 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_004871_010--Hb_000260_710 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_000976_190--Hb_011310_140 Hb_000976_190--Hb_006787_090 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_000194_010--Hb_000061_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_002044_020 Hb_002044_020 Hb_000061_150--Hb_002044_020 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_006846_070 Hb_006846_070 Hb_000061_150--Hb_006846_070 Hb_000061_150--Hb_001454_150 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15229 3.15909 17.7498 1.88627 3.74509 5.98311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34298 3.44245 3.88222 2.62383 18.8093

CAGE analysis