Hb_001019_070

Information

Type -
Description -
Location Contig1019: 78832-81340
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08030g
description POPTRDRAFT_207518; hypothetical protein
nr
ID XP_006380428.1
description hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
swissprot
ID Q5B5X8
description Probable glucan 1,3-beta-glucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=exgA PE=3 SV=2
trembl
ID U5G487
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05770g PE=3 SV=1
Gene Ontology
ID GO:0004553
description probable glucan -beta-glucosidase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_070 0.0 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
2 Hb_000260_240 0.1619782527 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
3 Hb_004846_230 0.211288316 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
4 Hb_003549_130 0.2149730791 - - neutral/alkaline invertase [Manihot esculenta]
5 Hb_021443_030 0.217216789 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
6 Hb_006788_090 0.219952847 - - -
7 Hb_008173_130 0.2217136475 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
8 Hb_002400_170 0.2276355813 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
9 Hb_000500_330 0.2351196402 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
10 Hb_015531_010 0.2351707202 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
11 Hb_034585_070 0.2352616791 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
12 Hb_001396_040 0.2366268864 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
13 Hb_000062_290 0.2366868156 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
14 Hb_107078_010 0.2407632302 - - -
15 Hb_000308_010 0.2415968474 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
16 Hb_001579_190 0.2423790178 - - conserved hypothetical protein [Ricinus communis]
17 Hb_137222_030 0.243389126 - - -
18 Hb_000392_240 0.2446051842 - - DNA binding protein, putative [Ricinus communis]
19 Hb_005599_020 0.2456853231 - - Protein MLO, putative [Ricinus communis]
20 Hb_000317_190 0.2469710608 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001019_070 Hb_001019_070 Hb_000260_240 Hb_000260_240 Hb_001019_070--Hb_000260_240 Hb_004846_230 Hb_004846_230 Hb_001019_070--Hb_004846_230 Hb_003549_130 Hb_003549_130 Hb_001019_070--Hb_003549_130 Hb_021443_030 Hb_021443_030 Hb_001019_070--Hb_021443_030 Hb_006788_090 Hb_006788_090 Hb_001019_070--Hb_006788_090 Hb_008173_130 Hb_008173_130 Hb_001019_070--Hb_008173_130 Hb_000260_240--Hb_008173_130 Hb_107078_010 Hb_107078_010 Hb_000260_240--Hb_107078_010 Hb_001898_100 Hb_001898_100 Hb_000260_240--Hb_001898_100 Hb_001579_190 Hb_001579_190 Hb_000260_240--Hb_001579_190 Hb_034585_070 Hb_034585_070 Hb_000260_240--Hb_034585_070 Hb_004846_230--Hb_006788_090 Hb_002942_120 Hb_002942_120 Hb_004846_230--Hb_002942_120 Hb_001396_040 Hb_001396_040 Hb_004846_230--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_004846_230--Hb_000500_330 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_000032_200 Hb_000032_200 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_089114_010 Hb_089114_010 Hb_021443_030--Hb_089114_010 Hb_002965_070 Hb_002965_070 Hb_021443_030--Hb_002965_070 Hb_000680_180 Hb_000680_180 Hb_021443_030--Hb_000680_180 Hb_021443_030--Hb_003549_130 Hb_001894_160 Hb_001894_160 Hb_021443_030--Hb_001894_160 Hb_000563_510 Hb_000563_510 Hb_021443_030--Hb_000563_510 Hb_006788_090--Hb_001396_040 Hb_006788_090--Hb_000500_330 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_000392_240 Hb_000392_240 Hb_006788_090--Hb_000392_240 Hb_011918_030 Hb_011918_030 Hb_008173_130--Hb_011918_030 Hb_008173_130--Hb_107078_010 Hb_000308_010 Hb_000308_010 Hb_008173_130--Hb_000308_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_003688_220 Hb_003688_220 Hb_008173_130--Hb_003688_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0412213 0.668227 2.42641 0.0337551 0.0539982 0.0646733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503601 0.0198116 0.112391 0.268252 0.417409

CAGE analysis