Hb_000078_090

Information

Type -
Description -
Location Contig78: 169131-169652
Sequence    

Annotation

kegg
ID rcu:RCOM_1074580
description acetylglucosaminyltransferase, putative
nr
ID XP_012081209.1
description PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17041 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57894: 167226-168758 , PASA_asmbl_57895: 169210-169432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_090 0.0 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
2 Hb_000094_040 0.1820501977 - - -
3 Hb_113673_010 0.2133815597 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
4 Hb_010366_010 0.2277290773 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_001565_060 0.2300049229 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
6 Hb_001393_010 0.2362000594 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
7 Hb_000094_080 0.2471801004 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
8 Hb_003089_030 0.2474379996 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
9 Hb_001847_060 0.2484708945 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Vitis vinifera]
10 Hb_099084_010 0.2509273596 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_000027_180 0.2517743118 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
12 Hb_008226_030 0.2549374328 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
13 Hb_000117_140 0.2577912068 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
14 Hb_003177_070 0.259268486 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
15 Hb_078160_010 0.2612853363 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_000227_340 0.2619195702 - - chloride channel clc, putative [Ricinus communis]
17 Hb_007849_050 0.2636196408 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
18 Hb_005568_090 0.2641977641 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_003059_010 0.2646003178 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
20 Hb_001178_030 0.2656291548 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000078_090 Hb_000078_090 Hb_000094_040 Hb_000094_040 Hb_000078_090--Hb_000094_040 Hb_113673_010 Hb_113673_010 Hb_000078_090--Hb_113673_010 Hb_010366_010 Hb_010366_010 Hb_000078_090--Hb_010366_010 Hb_001565_060 Hb_001565_060 Hb_000078_090--Hb_001565_060 Hb_001393_010 Hb_001393_010 Hb_000078_090--Hb_001393_010 Hb_000094_080 Hb_000094_080 Hb_000078_090--Hb_000094_080 Hb_000094_040--Hb_113673_010 Hb_000618_090 Hb_000618_090 Hb_000094_040--Hb_000618_090 Hb_063943_010 Hb_063943_010 Hb_000094_040--Hb_063943_010 Hb_010521_030 Hb_010521_030 Hb_000094_040--Hb_010521_030 Hb_000094_040--Hb_001393_010 Hb_003175_110 Hb_003175_110 Hb_113673_010--Hb_003175_110 Hb_003327_020 Hb_003327_020 Hb_113673_010--Hb_003327_020 Hb_113673_010--Hb_010521_030 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_000613_230 Hb_000613_230 Hb_010366_010--Hb_000613_230 Hb_000413_290 Hb_000413_290 Hb_010366_010--Hb_000413_290 Hb_001546_160 Hb_001546_160 Hb_010366_010--Hb_001546_160 Hb_003089_030 Hb_003089_030 Hb_010366_010--Hb_003089_030 Hb_005568_090 Hb_005568_090 Hb_010366_010--Hb_005568_090 Hb_001565_060--Hb_003089_030 Hb_000122_220 Hb_000122_220 Hb_001565_060--Hb_000122_220 Hb_128695_030 Hb_128695_030 Hb_001565_060--Hb_128695_030 Hb_001565_020 Hb_001565_020 Hb_001565_060--Hb_001565_020 Hb_001454_220 Hb_001454_220 Hb_001565_060--Hb_001454_220 Hb_000343_150 Hb_000343_150 Hb_001565_060--Hb_000343_150 Hb_001178_030 Hb_001178_030 Hb_001393_010--Hb_001178_030 Hb_001279_040 Hb_001279_040 Hb_001393_010--Hb_001279_040 Hb_008226_030 Hb_008226_030 Hb_001393_010--Hb_008226_030 Hb_000806_030 Hb_000806_030 Hb_001393_010--Hb_000806_030 Hb_034585_010 Hb_034585_010 Hb_001393_010--Hb_034585_010 Hb_000367_020 Hb_000367_020 Hb_001393_010--Hb_000367_020 Hb_002943_010 Hb_002943_010 Hb_000094_080--Hb_002943_010 Hb_002817_060 Hb_002817_060 Hb_000094_080--Hb_002817_060 Hb_000809_020 Hb_000809_020 Hb_000094_080--Hb_000809_020 Hb_000094_080--Hb_001393_010 Hb_004917_010 Hb_004917_010 Hb_000094_080--Hb_004917_010 Hb_007897_030 Hb_007897_030 Hb_000094_080--Hb_007897_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985142 2.60177 2.06103 1.09792 1.32464 0.0480032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.51216 0.610884 1.85543

CAGE analysis