Hb_010521_030

Information

Type -
Description -
Location Contig10521: 49865-52179
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01772: 49780-50274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010521_030 0.0 - - -
2 Hb_010521_020 0.1832167202 - - -
3 Hb_003175_110 0.2093059477 - - -
4 Hb_113673_010 0.2144805066 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_104812_010 0.2198718538 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
6 Hb_000883_030 0.2315206725 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
7 Hb_119622_010 0.2455763401 - - LRR receptor-like kinase family protein [Medicago truncatula]
8 Hb_000094_040 0.2496437916 - - -
9 Hb_146339_010 0.2537288323 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_063943_010 0.262067213 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
11 Hb_024404_010 0.2642306005 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
12 Hb_000618_090 0.2661295788 - - -
13 Hb_000964_070 0.2758383834 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
14 Hb_001079_070 0.2788449224 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
15 Hb_004545_170 0.2832557189 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
16 Hb_067402_010 0.2837597737 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
17 Hb_003912_030 0.2895170462 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
18 Hb_000941_140 0.289654899 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
19 Hb_003059_010 0.2898042839 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
20 Hb_007333_030 0.2914862472 - - -

Gene co-expression network

sample Hb_010521_030 Hb_010521_030 Hb_010521_020 Hb_010521_020 Hb_010521_030--Hb_010521_020 Hb_003175_110 Hb_003175_110 Hb_010521_030--Hb_003175_110 Hb_113673_010 Hb_113673_010 Hb_010521_030--Hb_113673_010 Hb_104812_010 Hb_104812_010 Hb_010521_030--Hb_104812_010 Hb_000883_030 Hb_000883_030 Hb_010521_030--Hb_000883_030 Hb_119622_010 Hb_119622_010 Hb_010521_030--Hb_119622_010 Hb_001195_190 Hb_001195_190 Hb_010521_020--Hb_001195_190 Hb_005568_100 Hb_005568_100 Hb_010521_020--Hb_005568_100 Hb_000789_130 Hb_000789_130 Hb_010521_020--Hb_000789_130 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_004296_010 Hb_004296_010 Hb_010521_020--Hb_004296_010 Hb_063943_010 Hb_063943_010 Hb_003175_110--Hb_063943_010 Hb_003175_110--Hb_113673_010 Hb_001266_120 Hb_001266_120 Hb_003175_110--Hb_001266_120 Hb_085083_020 Hb_085083_020 Hb_003175_110--Hb_085083_020 Hb_146339_010 Hb_146339_010 Hb_003175_110--Hb_146339_010 Hb_003124_030 Hb_003124_030 Hb_003175_110--Hb_003124_030 Hb_003327_020 Hb_003327_020 Hb_113673_010--Hb_003327_020 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_007333_030 Hb_007333_030 Hb_104812_010--Hb_007333_030 Hb_004117_100 Hb_004117_100 Hb_104812_010--Hb_004117_100 Hb_104812_010--Hb_000883_030 Hb_000983_160 Hb_000983_160 Hb_104812_010--Hb_000983_160 Hb_024404_010 Hb_024404_010 Hb_104812_010--Hb_024404_010 Hb_135611_010 Hb_135611_010 Hb_104812_010--Hb_135611_010 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_119622_010--Hb_003175_110 Hb_004545_170 Hb_004545_170 Hb_119622_010--Hb_004545_170 Hb_119622_010--Hb_113673_010 Hb_000258_290 Hb_000258_290 Hb_119622_010--Hb_000258_290 Hb_167973_010 Hb_167973_010 Hb_119622_010--Hb_167973_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1989 1.1923 1.1806 2.67706 6.62684 0.358896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.20442 2.3406 3.68204

CAGE analysis