Hb_119622_010

Information

Type -
Description -
Location Contig119622: 417-869
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14160g
description POPTRDRAFT_579055; hypothetical protein
nr
ID AES86913.2
description LRR receptor-like kinase family protein [Medicago truncatula]
swissprot
ID Q05091
description Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1
trembl
ID G7JP59
description LRR receptor-like kinase family protein OS=Medicago truncatula GN=MTR_4g016870 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase fls2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119622_010 0.0 - - LRR receptor-like kinase family protein [Medicago truncatula]
2 Hb_003175_110 0.2326598842 - - -
3 Hb_010521_030 0.2455763401 - - -
4 Hb_004545_170 0.2865120347 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
5 Hb_113673_010 0.2877656484 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
6 Hb_000258_290 0.2877870247 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
7 Hb_167973_010 0.2882461381 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
8 Hb_000500_080 0.2896107499 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
9 Hb_000482_150 0.2926424171 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
10 Hb_002902_080 0.2943458247 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
11 Hb_000649_270 0.3050272083 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
12 Hb_004657_030 0.3073222444 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
13 Hb_002367_110 0.3090096198 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
14 Hb_007508_050 0.3111149559 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
15 Hb_119600_050 0.3123267759 - - sugar transporter, putative [Ricinus communis]
16 Hb_010521_020 0.3147062128 - - -
17 Hb_085187_010 0.3156669228 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_117038_010 0.3173387785 - - cysteine protease [Hevea brasiliensis]
19 Hb_162280_010 0.3183597848 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
20 Hb_007192_060 0.3191919904 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_119622_010 Hb_119622_010 Hb_003175_110 Hb_003175_110 Hb_119622_010--Hb_003175_110 Hb_010521_030 Hb_010521_030 Hb_119622_010--Hb_010521_030 Hb_004545_170 Hb_004545_170 Hb_119622_010--Hb_004545_170 Hb_113673_010 Hb_113673_010 Hb_119622_010--Hb_113673_010 Hb_000258_290 Hb_000258_290 Hb_119622_010--Hb_000258_290 Hb_167973_010 Hb_167973_010 Hb_119622_010--Hb_167973_010 Hb_063943_010 Hb_063943_010 Hb_003175_110--Hb_063943_010 Hb_003175_110--Hb_113673_010 Hb_001266_120 Hb_001266_120 Hb_003175_110--Hb_001266_120 Hb_085083_020 Hb_085083_020 Hb_003175_110--Hb_085083_020 Hb_146339_010 Hb_146339_010 Hb_003175_110--Hb_146339_010 Hb_003124_030 Hb_003124_030 Hb_003175_110--Hb_003124_030 Hb_010521_020 Hb_010521_020 Hb_010521_030--Hb_010521_020 Hb_010521_030--Hb_003175_110 Hb_010521_030--Hb_113673_010 Hb_104812_010 Hb_104812_010 Hb_010521_030--Hb_104812_010 Hb_000883_030 Hb_000883_030 Hb_010521_030--Hb_000883_030 Hb_004223_290 Hb_004223_290 Hb_004545_170--Hb_004223_290 Hb_002044_050 Hb_002044_050 Hb_004545_170--Hb_002044_050 Hb_011344_020 Hb_011344_020 Hb_004545_170--Hb_011344_020 Hb_000261_100 Hb_000261_100 Hb_004545_170--Hb_000261_100 Hb_001401_060 Hb_001401_060 Hb_004545_170--Hb_001401_060 Hb_004875_030 Hb_004875_030 Hb_004545_170--Hb_004875_030 Hb_003327_020 Hb_003327_020 Hb_113673_010--Hb_003327_020 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010 Hb_000091_060 Hb_000091_060 Hb_000258_290--Hb_000091_060 Hb_074197_020 Hb_074197_020 Hb_000258_290--Hb_074197_020 Hb_005843_160 Hb_005843_160 Hb_000258_290--Hb_005843_160 Hb_009485_020 Hb_009485_020 Hb_000258_290--Hb_009485_020 Hb_000424_150 Hb_000424_150 Hb_000258_290--Hb_000424_150 Hb_002498_050 Hb_002498_050 Hb_000258_290--Hb_002498_050 Hb_004884_030 Hb_004884_030 Hb_167973_010--Hb_004884_030 Hb_004875_010 Hb_004875_010 Hb_167973_010--Hb_004875_010 Hb_000964_170 Hb_000964_170 Hb_167973_010--Hb_000964_170 Hb_012353_040 Hb_012353_040 Hb_167973_010--Hb_012353_040 Hb_119600_050 Hb_119600_050 Hb_167973_010--Hb_119600_050 Hb_003632_030 Hb_003632_030 Hb_167973_010--Hb_003632_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.752501 0.453729 0 1.59489 1.98979 0.34904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.34878 1.06082 1.52198

CAGE analysis