Hb_004545_170

Information

Type -
Description -
Location Contig4545: 188777-199370
Sequence    

Annotation

kegg
ID rcu:RCOM_1429820
description breast carcinoma amplified sequence, putative
nr
ID XP_012089136.1
description PREDICTED: autophagy-related protein 18h [Jatropha curcas]
swissprot
ID Q8H1Q5
description Autophagy-related protein 18h OS=Arabidopsis thaliana GN=ATG18H PE=2 SV=1
trembl
ID A0A067JL47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23401 PE=4 SV=1
Gene Ontology
ID GO:0000166
description autophagy-related protein 18h-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43405: 191661-195639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_170 0.0 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
2 Hb_004223_290 0.1244805279 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
3 Hb_002044_050 0.1315523285 - - -
4 Hb_011344_020 0.1339080219 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
5 Hb_000261_100 0.1344019563 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
6 Hb_001401_060 0.134545231 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
7 Hb_004875_030 0.1345988643 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
8 Hb_001504_040 0.1362326948 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
9 Hb_000780_190 0.1374378374 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
10 Hb_137276_010 0.1377379963 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_004195_060 0.1396556965 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
12 Hb_000376_060 0.1413688876 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
13 Hb_135611_010 0.1415170267 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
14 Hb_004701_050 0.145676729 - - alpha1 family protein [Populus trichocarpa]
15 Hb_000035_410 0.1463648805 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
16 Hb_000983_160 0.1468916324 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
17 Hb_030627_060 0.1474704107 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
18 Hb_002044_170 0.1477599564 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
19 Hb_001898_090 0.147886871 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
20 Hb_000183_050 0.1495153041 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_170 Hb_004545_170 Hb_004223_290 Hb_004223_290 Hb_004545_170--Hb_004223_290 Hb_002044_050 Hb_002044_050 Hb_004545_170--Hb_002044_050 Hb_011344_020 Hb_011344_020 Hb_004545_170--Hb_011344_020 Hb_000261_100 Hb_000261_100 Hb_004545_170--Hb_000261_100 Hb_001401_060 Hb_001401_060 Hb_004545_170--Hb_001401_060 Hb_004875_030 Hb_004875_030 Hb_004545_170--Hb_004875_030 Hb_004223_290--Hb_004875_030 Hb_000345_360 Hb_000345_360 Hb_004223_290--Hb_000345_360 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_004223_290--Hb_002044_050 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040 Hb_041828_010 Hb_041828_010 Hb_004223_290--Hb_041828_010 Hb_007426_150 Hb_007426_150 Hb_002044_050--Hb_007426_150 Hb_002044_050--Hb_004875_030 Hb_000209_070 Hb_000209_070 Hb_002044_050--Hb_000209_070 Hb_001366_210 Hb_001366_210 Hb_002044_050--Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_002044_050--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_011344_020--Hb_089140_050 Hb_000958_070 Hb_000958_070 Hb_011344_020--Hb_000958_070 Hb_000343_110 Hb_000343_110 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_000429_220 Hb_000429_220 Hb_011344_020--Hb_000429_220 Hb_000780_190 Hb_000780_190 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000261_100--Hb_000035_410 Hb_004701_050 Hb_004701_050 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001235_230 Hb_001235_230 Hb_001401_060--Hb_001235_230 Hb_002044_170 Hb_002044_170 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_000406_020 Hb_000406_020 Hb_001401_060--Hb_000406_020 Hb_004875_030--Hb_000345_360 Hb_000990_090 Hb_000990_090 Hb_004875_030--Hb_000990_090 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_009529_030 Hb_009529_030 Hb_004875_030--Hb_009529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95404 3.38674 2.31367 4.81759 8.52305 4.86377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44214 0.636379 2.21398 3.93177 6.93314

CAGE analysis