Hb_000010_270

Information

Type -
Description -
Location Contig10: 282769-284522
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09890g
description POPTRDRAFT_666563; Cys endopeptidase family protein
nr
ID XP_012079936.1
description PREDICTED: vignain [Jatropha curcas]
swissprot
ID P25803
description Vignain OS=Phaseolus vulgaris PE=2 SV=2
trembl
ID A0A067K4E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11373 PE=3 SV=1
Gene Ontology
ID GO:0005788
description cysteine proteinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00159: 277952-284601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_270 0.0 - - PREDICTED: vignain [Jatropha curcas]
2 Hb_001153_050 0.1250650463 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
3 Hb_073973_150 0.1327279242 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
4 Hb_002475_040 0.1388851813 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
5 Hb_019641_030 0.1420383952 - - chitin elicitor receptor kinase 1 [Chrysanthemum boreale]
6 Hb_005323_010 0.1446198677 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
7 Hb_004355_040 0.1484847368 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_156850_090 0.1524562625 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_000589_190 0.1556792088 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
10 Hb_007982_030 0.1569892399 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
11 Hb_158092_080 0.1571727598 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
12 Hb_002942_210 0.1571928879 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
13 Hb_002092_110 0.1572590196 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
14 Hb_000497_190 0.157263714 - - sterol isomerase, putative [Ricinus communis]
15 Hb_002814_110 0.1575345809 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
16 Hb_000610_040 0.1578434801 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
17 Hb_000634_020 0.159225957 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
18 Hb_025668_010 0.1595131791 - - unnamed protein product [Coffea canephora]
19 Hb_011972_020 0.1598248047 - - protein binding protein, putative [Ricinus communis]
20 Hb_139002_010 0.1604940054 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_270 Hb_000010_270 Hb_001153_050 Hb_001153_050 Hb_000010_270--Hb_001153_050 Hb_073973_150 Hb_073973_150 Hb_000010_270--Hb_073973_150 Hb_002475_040 Hb_002475_040 Hb_000010_270--Hb_002475_040 Hb_019641_030 Hb_019641_030 Hb_000010_270--Hb_019641_030 Hb_005323_010 Hb_005323_010 Hb_000010_270--Hb_005323_010 Hb_004355_040 Hb_004355_040 Hb_000010_270--Hb_004355_040 Hb_006573_160 Hb_006573_160 Hb_001153_050--Hb_006573_160 Hb_001153_050--Hb_073973_150 Hb_002814_110 Hb_002814_110 Hb_001153_050--Hb_002814_110 Hb_011972_020 Hb_011972_020 Hb_001153_050--Hb_011972_020 Hb_001153_050--Hb_005323_010 Hb_005895_010 Hb_005895_010 Hb_001153_050--Hb_005895_010 Hb_000640_070 Hb_000640_070 Hb_073973_150--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_073973_150--Hb_001194_020 Hb_008397_010 Hb_008397_010 Hb_073973_150--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_073973_150--Hb_000284_230 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_073973_150--Hb_002475_040 Hb_002475_040--Hb_000284_230 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_158092_080 Hb_158092_080 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_002391_360 Hb_002391_360 Hb_019641_030--Hb_002391_360 Hb_005730_010 Hb_005730_010 Hb_019641_030--Hb_005730_010 Hb_002259_080 Hb_002259_080 Hb_019641_030--Hb_002259_080 Hb_000497_190 Hb_000497_190 Hb_019641_030--Hb_000497_190 Hb_000963_040 Hb_000963_040 Hb_019641_030--Hb_000963_040 Hb_002596_060 Hb_002596_060 Hb_019641_030--Hb_002596_060 Hb_005323_010--Hb_006573_160 Hb_000878_160 Hb_000878_160 Hb_005323_010--Hb_000878_160 Hb_005323_010--Hb_073973_150 Hb_003398_100 Hb_003398_100 Hb_005323_010--Hb_003398_100 Hb_033554_020 Hb_033554_020 Hb_005323_010--Hb_033554_020 Hb_000630_030 Hb_000630_030 Hb_004355_040--Hb_000630_030 Hb_000580_030 Hb_000580_030 Hb_004355_040--Hb_000580_030 Hb_000318_040 Hb_000318_040 Hb_004355_040--Hb_000318_040 Hb_000413_070 Hb_000413_070 Hb_004355_040--Hb_000413_070 Hb_001103_090 Hb_001103_090 Hb_004355_040--Hb_001103_090 Hb_001558_040 Hb_001558_040 Hb_004355_040--Hb_001558_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69616 1.88871 2.81533 2.86206 3.45396 0.659254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.641999 0.466098 0.787486 2.4355 2.38732

CAGE analysis