Hb_010366_010

Information

Type -
Description -
Location Contig10366: 2392-5028
Sequence    

Annotation

kegg
ID cmo:103502718
description uncharacterized LOC103502718
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010366_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_000078_090 0.2277290773 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
3 Hb_000613_230 0.2550765886 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000413_290 0.2857694623 - - -
5 Hb_001546_160 0.2974194157 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_003089_030 0.2978667036 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
7 Hb_005568_090 0.3028171142 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_001565_060 0.3044040593 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
9 Hb_000094_040 0.3053771332 - - -
10 Hb_152540_010 0.3154002064 - - -
11 Hb_000139_070 0.3181942533 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
12 Hb_000618_090 0.3210966359 - - -
13 Hb_004570_030 0.3263788234 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012754_010 0.3276279186 - - -
15 Hb_000343_150 0.3357764706 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
16 Hb_000487_190 0.3363689103 - - -
17 Hb_003059_010 0.3378370574 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
18 Hb_008453_130 0.3382452382 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
19 Hb_000120_380 0.3390349836 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
20 Hb_003581_270 0.3424927008 - - PREDICTED: protein kinase APK1A, chloroplastic-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_010366_010 Hb_010366_010 Hb_000078_090 Hb_000078_090 Hb_010366_010--Hb_000078_090 Hb_000613_230 Hb_000613_230 Hb_010366_010--Hb_000613_230 Hb_000413_290 Hb_000413_290 Hb_010366_010--Hb_000413_290 Hb_001546_160 Hb_001546_160 Hb_010366_010--Hb_001546_160 Hb_003089_030 Hb_003089_030 Hb_010366_010--Hb_003089_030 Hb_005568_090 Hb_005568_090 Hb_010366_010--Hb_005568_090 Hb_000094_040 Hb_000094_040 Hb_000078_090--Hb_000094_040 Hb_113673_010 Hb_113673_010 Hb_000078_090--Hb_113673_010 Hb_001565_060 Hb_001565_060 Hb_000078_090--Hb_001565_060 Hb_001393_010 Hb_001393_010 Hb_000078_090--Hb_001393_010 Hb_000094_080 Hb_000094_080 Hb_000078_090--Hb_000094_080 Hb_003020_060 Hb_003020_060 Hb_000613_230--Hb_003020_060 Hb_000613_230--Hb_001546_160 Hb_001019_070 Hb_001019_070 Hb_000613_230--Hb_001019_070 Hb_021443_030 Hb_021443_030 Hb_000613_230--Hb_021443_030 Hb_011242_020 Hb_011242_020 Hb_000613_230--Hb_011242_020 Hb_000181_410 Hb_000181_410 Hb_000413_290--Hb_000181_410 Hb_001300_100 Hb_001300_100 Hb_000413_290--Hb_001300_100 Hb_007333_030 Hb_007333_030 Hb_000413_290--Hb_007333_030 Hb_005656_030 Hb_005656_030 Hb_000413_290--Hb_005656_030 Hb_000107_470 Hb_000107_470 Hb_000413_290--Hb_000107_470 Hb_001247_110 Hb_001247_110 Hb_001546_160--Hb_001247_110 Hb_002799_130 Hb_002799_130 Hb_001546_160--Hb_002799_130 Hb_000699_100 Hb_000699_100 Hb_001546_160--Hb_000699_100 Hb_002290_020 Hb_002290_020 Hb_001546_160--Hb_002290_020 Hb_000424_040 Hb_000424_040 Hb_001546_160--Hb_000424_040 Hb_001638_310 Hb_001638_310 Hb_001546_160--Hb_001638_310 Hb_003089_030--Hb_001565_060 Hb_007576_220 Hb_007576_220 Hb_003089_030--Hb_007576_220 Hb_004236_010 Hb_004236_010 Hb_003089_030--Hb_004236_010 Hb_007576_230 Hb_007576_230 Hb_003089_030--Hb_007576_230 Hb_011161_020 Hb_011161_020 Hb_003089_030--Hb_011161_020 Hb_000122_220 Hb_000122_220 Hb_003089_030--Hb_000122_220 Hb_000165_110 Hb_000165_110 Hb_005568_090--Hb_000165_110 Hb_000058_050 Hb_000058_050 Hb_005568_090--Hb_000058_050 Hb_000890_010 Hb_000890_010 Hb_005568_090--Hb_000890_010 Hb_011609_010 Hb_011609_010 Hb_005568_090--Hb_011609_010 Hb_000189_390 Hb_000189_390 Hb_005568_090--Hb_000189_390 Hb_002609_190 Hb_002609_190 Hb_005568_090--Hb_002609_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0564621 0.112693 0.098421 0 0.0705401 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0627805 0.0271334 0.0698272

CAGE analysis