Hb_002290_020

Information

Type -
Description -
Location Contig2290: 6602-9451
Sequence    

Annotation

kegg
ID rcu:RCOM_1258780
description hypothetical protein
nr
ID XP_002530524.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAX1
description Protein trichome birefringence-like 8 OS=Arabidopsis thaliana GN=TBL8 PE=2 SV=1
trembl
ID B9SX05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1258780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000431_150 0.1847770336 - - ribosomal protein L27, putative [Ricinus communis]
3 Hb_000699_100 0.2089540467 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
4 Hb_001638_310 0.2098096462 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
5 Hb_005016_140 0.2113126224 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_021576_080 0.2139238967 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
7 Hb_000260_430 0.2151700382 - - ribosomal protein L17, putative [Ricinus communis]
8 Hb_000690_060 0.2164183684 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
9 Hb_007426_170 0.2170114457 transcription factor TF Family: TCP -
10 Hb_023732_050 0.2186577582 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_001711_060 0.2195746626 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
12 Hb_001519_170 0.2207914054 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
13 Hb_007694_060 0.222249362 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
14 Hb_000189_150 0.2264632294 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
15 Hb_005147_080 0.2274121662 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000976_190 0.2282983314 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
17 Hb_003862_040 0.232777227 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_172632_060 0.2335203235 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
19 Hb_001546_160 0.2340714599 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_011310_140 0.2344155817 - - hypothetical protein JCGZ_07173 [Jatropha curcas]

Gene co-expression network

sample Hb_002290_020 Hb_002290_020 Hb_000431_150 Hb_000431_150 Hb_002290_020--Hb_000431_150 Hb_000699_100 Hb_000699_100 Hb_002290_020--Hb_000699_100 Hb_001638_310 Hb_001638_310 Hb_002290_020--Hb_001638_310 Hb_005016_140 Hb_005016_140 Hb_002290_020--Hb_005016_140 Hb_021576_080 Hb_021576_080 Hb_002290_020--Hb_021576_080 Hb_000260_430 Hb_000260_430 Hb_002290_020--Hb_000260_430 Hb_000189_150 Hb_000189_150 Hb_000431_150--Hb_000189_150 Hb_000431_150--Hb_021576_080 Hb_001711_060 Hb_001711_060 Hb_000431_150--Hb_001711_060 Hb_001519_170 Hb_001519_170 Hb_000431_150--Hb_001519_170 Hb_000152_180 Hb_000152_180 Hb_000431_150--Hb_000152_180 Hb_023732_050 Hb_023732_050 Hb_000431_150--Hb_023732_050 Hb_005147_080 Hb_005147_080 Hb_000699_100--Hb_005147_080 Hb_000424_040 Hb_000424_040 Hb_000699_100--Hb_000424_040 Hb_167103_010 Hb_167103_010 Hb_000699_100--Hb_167103_010 Hb_000699_100--Hb_005016_140 Hb_002660_190 Hb_002660_190 Hb_000699_100--Hb_002660_190 Hb_002290_030 Hb_002290_030 Hb_000699_100--Hb_002290_030 Hb_003862_040 Hb_003862_040 Hb_001638_310--Hb_003862_040 Hb_000574_470 Hb_000574_470 Hb_001638_310--Hb_000574_470 Hb_001638_310--Hb_001711_060 Hb_000094_100 Hb_000094_100 Hb_001638_310--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_001638_310--Hb_172632_060 Hb_000056_310 Hb_000056_310 Hb_001638_310--Hb_000056_310 Hb_001454_150 Hb_001454_150 Hb_005016_140--Hb_001454_150 Hb_004871_010 Hb_004871_010 Hb_005016_140--Hb_004871_010 Hb_000976_190 Hb_000976_190 Hb_005016_140--Hb_000976_190 Hb_000194_010 Hb_000194_010 Hb_005016_140--Hb_000194_010 Hb_000061_150 Hb_000061_150 Hb_005016_140--Hb_000061_150 Hb_011310_140 Hb_011310_140 Hb_005016_140--Hb_011310_140 Hb_001541_110 Hb_001541_110 Hb_021576_080--Hb_001541_110 Hb_000003_780 Hb_000003_780 Hb_021576_080--Hb_000003_780 Hb_005332_080 Hb_005332_080 Hb_021576_080--Hb_005332_080 Hb_000122_190 Hb_000122_190 Hb_021576_080--Hb_000122_190 Hb_001329_090 Hb_001329_090 Hb_021576_080--Hb_001329_090 Hb_007451_040 Hb_007451_040 Hb_000260_430--Hb_007451_040 Hb_000260_430--Hb_011310_140 Hb_006787_090 Hb_006787_090 Hb_000260_430--Hb_006787_090 Hb_000260_430--Hb_000976_190 Hb_000723_350 Hb_000723_350 Hb_000260_430--Hb_000723_350 Hb_000311_120 Hb_000311_120 Hb_000260_430--Hb_000311_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0582312 0.0471313 0.331751 0.0261943 0.0781182 0.0292959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0380654 0.119776 0.111703 0 0.31075

CAGE analysis