Hb_021576_080

Information

Type -
Description -
Location Contig21576: 33803-39993
Sequence    

Annotation

kegg
ID rcu:RCOM_0920880
description protein binding protein, putative
nr
ID XP_012076425.1
description PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
swissprot
ID Q8H1D3
description BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1
trembl
ID B9RNV5
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0920880 PE=4 SV=1
Gene Ontology
ID GO:0005886
description btb poz domain-containing protein npy1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22315: 33825-40037 , PASA_asmbl_22316: 36444-37102 , PASA_asmbl_22319: 36547-60760 , PASA_asmbl_22322: 35457-36409
cDNA
(Sanger)
(ID:Location)		 026_A15r.ab1: 36547-60760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_080 0.0 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
2 Hb_001541_110 0.1174586491 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000003_780 0.1220059302 - - hexokinase [Manihot esculenta]
4 Hb_005332_080 0.1229557473 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
5 Hb_000122_190 0.127843941 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
6 Hb_000431_150 0.1302983863 - - ribosomal protein L27, putative [Ricinus communis]
7 Hb_001329_090 0.1333911932 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001587_180 0.1355484055 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
9 Hb_000566_050 0.1379526948 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
10 Hb_021732_010 0.138464227 - - biotin carboxylase [Vernicia fordii]
11 Hb_007451_040 0.1392009852 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_001102_050 0.1393389447 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
13 Hb_000905_120 0.1420726452 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
14 Hb_000802_130 0.1469320242 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
15 Hb_007558_090 0.1495122384 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_005217_030 0.1498007909 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
17 Hb_009771_060 0.1527455487 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
18 Hb_002027_320 0.1527815581 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
19 Hb_000152_180 0.15445147 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
20 Hb_007002_020 0.154677738 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]

Gene co-expression network

sample Hb_021576_080 Hb_021576_080 Hb_001541_110 Hb_001541_110 Hb_021576_080--Hb_001541_110 Hb_000003_780 Hb_000003_780 Hb_021576_080--Hb_000003_780 Hb_005332_080 Hb_005332_080 Hb_021576_080--Hb_005332_080 Hb_000122_190 Hb_000122_190 Hb_021576_080--Hb_000122_190 Hb_000431_150 Hb_000431_150 Hb_021576_080--Hb_000431_150 Hb_001329_090 Hb_001329_090 Hb_021576_080--Hb_001329_090 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_000003_780--Hb_001587_180 Hb_000537_100 Hb_000537_100 Hb_005332_080--Hb_000537_100 Hb_000318_220 Hb_000318_220 Hb_005332_080--Hb_000318_220 Hb_029622_120 Hb_029622_120 Hb_005332_080--Hb_029622_120 Hb_002871_040 Hb_002871_040 Hb_005332_080--Hb_002871_040 Hb_002218_020 Hb_002218_020 Hb_005332_080--Hb_002218_020 Hb_021576_150 Hb_021576_150 Hb_005332_080--Hb_021576_150 Hb_000122_190--Hb_001900_140 Hb_000122_190--Hb_001587_180 Hb_000122_190--Hb_007002_020 Hb_004965_110 Hb_004965_110 Hb_000122_190--Hb_004965_110 Hb_027506_040 Hb_027506_040 Hb_000122_190--Hb_027506_040 Hb_000122_190--Hb_000003_780 Hb_000189_150 Hb_000189_150 Hb_000431_150--Hb_000189_150 Hb_001711_060 Hb_001711_060 Hb_000431_150--Hb_001711_060 Hb_001519_170 Hb_001519_170 Hb_000431_150--Hb_001519_170 Hb_000152_180 Hb_000152_180 Hb_000431_150--Hb_000152_180 Hb_023732_050 Hb_023732_050 Hb_000431_150--Hb_023732_050 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_003077_150 Hb_003077_150 Hb_001329_090--Hb_003077_150 Hb_001329_090--Hb_001541_110 Hb_000035_240 Hb_000035_240 Hb_001329_090--Hb_000035_240 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_001329_090--Hb_000413_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.16205 8.29665 50.9355 11.7598 7.23434 6.57979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.759 13.8175 18.0858 3.57294 23.694

CAGE analysis