Hb_001247_110

Information

Type -
Description -
Location Contig1247: 59903-61958
Sequence    

Annotation

kegg
ID rcu:RCOM_1436160
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002512560.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID B9RFP1
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1436160 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_110 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_002799_130 0.1936308838 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
3 Hb_001546_160 0.2103004557 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_005000_080 0.2179626397 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
5 Hb_007576_070 0.2189406706 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
6 Hb_000270_600 0.2198337675 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
7 Hb_001054_070 0.2204846873 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
8 Hb_000208_190 0.2245237939 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
9 Hb_001638_330 0.2251039476 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
10 Hb_000586_020 0.2264507938 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
11 Hb_004545_120 0.2267002599 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
12 Hb_005000_060 0.2283134951 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
13 Hb_000673_010 0.228437143 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
14 Hb_000212_370 0.2293113633 - - thioredoxin f-type, putative [Ricinus communis]
15 Hb_010344_020 0.2302580963 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
16 Hb_005015_020 0.2336187705 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_002301_350 0.2340776643 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_001021_210 0.2340817317 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_022378_010 0.2346065837 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
20 Hb_001638_310 0.235244417 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]

Gene co-expression network

sample Hb_001247_110 Hb_001247_110 Hb_002799_130 Hb_002799_130 Hb_001247_110--Hb_002799_130 Hb_001546_160 Hb_001546_160 Hb_001247_110--Hb_001546_160 Hb_005000_080 Hb_005000_080 Hb_001247_110--Hb_005000_080 Hb_007576_070 Hb_007576_070 Hb_001247_110--Hb_007576_070 Hb_000270_600 Hb_000270_600 Hb_001247_110--Hb_000270_600 Hb_001054_070 Hb_001054_070 Hb_001247_110--Hb_001054_070 Hb_005015_020 Hb_005015_020 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002928_030 Hb_002928_030 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_003929_220 Hb_003929_220 Hb_002799_130--Hb_003929_220 Hb_004324_120 Hb_004324_120 Hb_002799_130--Hb_004324_120 Hb_001546_160--Hb_002799_130 Hb_000699_100 Hb_000699_100 Hb_001546_160--Hb_000699_100 Hb_002290_020 Hb_002290_020 Hb_001546_160--Hb_002290_020 Hb_000424_040 Hb_000424_040 Hb_001546_160--Hb_000424_040 Hb_001638_310 Hb_001638_310 Hb_001546_160--Hb_001638_310 Hb_003994_080 Hb_003994_080 Hb_005000_080--Hb_003994_080 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_138585_030 Hb_138585_030 Hb_005000_080--Hb_138585_030 Hb_000188_060 Hb_000188_060 Hb_005000_080--Hb_000188_060 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_001021_210 Hb_001021_210 Hb_005000_080--Hb_001021_210 Hb_000805_200 Hb_000805_200 Hb_007576_070--Hb_000805_200 Hb_000529_130 Hb_000529_130 Hb_007576_070--Hb_000529_130 Hb_001571_030 Hb_001571_030 Hb_007576_070--Hb_001571_030 Hb_003734_080 Hb_003734_080 Hb_007576_070--Hb_003734_080 Hb_000673_010 Hb_000673_010 Hb_007576_070--Hb_000673_010 Hb_001638_330 Hb_001638_330 Hb_007576_070--Hb_001638_330 Hb_001766_070 Hb_001766_070 Hb_000270_600--Hb_001766_070 Hb_000270_600--Hb_000673_010 Hb_000011_240 Hb_000011_240 Hb_000270_600--Hb_000011_240 Hb_000445_210 Hb_000445_210 Hb_000270_600--Hb_000445_210 Hb_001409_060 Hb_001409_060 Hb_000270_600--Hb_001409_060 Hb_001430_020 Hb_001430_020 Hb_000270_600--Hb_001430_020 Hb_002343_010 Hb_002343_010 Hb_001054_070--Hb_002343_010 Hb_121089_020 Hb_121089_020 Hb_001054_070--Hb_121089_020 Hb_001269_370 Hb_001269_370 Hb_001054_070--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_001054_070--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001054_070--Hb_000506_110 Hb_008120_040 Hb_008120_040 Hb_001054_070--Hb_008120_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0327289 0.140251 0.211159 0.0548637 0.0409808 0.0147567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0523075 0.0980644 0.0104476 0.218348

CAGE analysis