Hb_000188_060

Information

Type -
Description -
Location Contig188: 79853-80326
Sequence    

Annotation

kegg
ID rcu:RCOM_0516190
description zinc finger protein, putative
nr
ID XP_012066479.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
swissprot
ID Q9SJM6
description Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1
trembl
ID A0A067L6B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23668 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger a20 and an1 domain-containing stress-associated protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18541: 79616-80666 , PASA_asmbl_18542: 79616-80666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000188_060 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
2 Hb_005000_080 0.0972643141 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
3 Hb_000016_200 0.1163823277 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000684_390 0.1210425627 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
5 Hb_003994_080 0.1217393685 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
6 Hb_000140_060 0.1245200756 - - 50S ribosomal protein L5, putative [Ricinus communis]
7 Hb_000069_360 0.1251620171 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001628_120 0.1251915467 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
9 Hb_000208_190 0.1316700899 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
10 Hb_001160_100 0.1368347163 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
11 Hb_000376_210 0.1375431002 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
12 Hb_005305_020 0.1378034805 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
13 Hb_000397_150 0.1385740499 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
14 Hb_000300_510 0.1390959777 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
15 Hb_000175_050 0.1398193119 - - -
16 Hb_000107_250 0.1439458966 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
17 Hb_001021_210 0.1443735755 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_042083_040 0.1443943103 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011053_030 0.1448278414 - - -
20 Hb_000599_210 0.1451522036 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000188_060 Hb_000188_060 Hb_005000_080 Hb_005000_080 Hb_000188_060--Hb_005000_080 Hb_000016_200 Hb_000016_200 Hb_000188_060--Hb_000016_200 Hb_000684_390 Hb_000684_390 Hb_000188_060--Hb_000684_390 Hb_003994_080 Hb_003994_080 Hb_000188_060--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000188_060--Hb_000140_060 Hb_000069_360 Hb_000069_360 Hb_000188_060--Hb_000069_360 Hb_005000_080--Hb_003994_080 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_138585_030 Hb_138585_030 Hb_005000_080--Hb_138585_030 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_001021_210 Hb_001021_210 Hb_005000_080--Hb_001021_210 Hb_005305_020 Hb_005305_020 Hb_000016_200--Hb_005305_020 Hb_000175_050 Hb_000175_050 Hb_000016_200--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_000016_200--Hb_011053_030 Hb_000016_200--Hb_005000_080 Hb_020378_060 Hb_020378_060 Hb_000016_200--Hb_020378_060 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_003752_090 Hb_003752_090 Hb_003994_080--Hb_003752_090 Hb_003994_080--Hb_001021_210 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_000140_060--Hb_000069_360 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_000069_360--Hb_003994_080 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59652 22.451 33.4639 38.6862 6.42134 4.75885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74963 17.5199 15.8283 6.60007 58.5203

CAGE analysis