Hb_000016_200

Information

Type -
Description -
Location Contig16: 208325-209492
Sequence    

Annotation

kegg
ID rcu:RCOM_1497590
description hypothetical protein
nr
ID XP_002510850.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9H5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497590 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp-dependent clp protease atp-binding subunit clpx

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14288: 208366-209494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000188_060 0.1163823277 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
3 Hb_005305_020 0.1279214596 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
4 Hb_000175_050 0.134355396 - - -
5 Hb_011053_030 0.1344687783 - - -
6 Hb_005000_080 0.136208999 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
7 Hb_020378_060 0.1404303871 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
8 Hb_026314_030 0.141631223 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_003941_030 0.145217971 - - Protease ecfE, putative [Ricinus communis]
10 Hb_004375_050 0.146519035 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001946_380 0.1472245542 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
12 Hb_000032_400 0.1506169738 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
13 Hb_001629_090 0.1519118195 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001307_100 0.1527858994 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_000849_120 0.1530062777 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
16 Hb_004672_020 0.1535607281 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_001628_120 0.1538772287 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
18 Hb_000483_100 0.1561552591 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
19 Hb_002290_030 0.1565267229 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
20 Hb_003875_030 0.158046943 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_200 Hb_000016_200 Hb_000188_060 Hb_000188_060 Hb_000016_200--Hb_000188_060 Hb_005305_020 Hb_005305_020 Hb_000016_200--Hb_005305_020 Hb_000175_050 Hb_000175_050 Hb_000016_200--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_000016_200--Hb_011053_030 Hb_005000_080 Hb_005000_080 Hb_000016_200--Hb_005000_080 Hb_020378_060 Hb_020378_060 Hb_000016_200--Hb_020378_060 Hb_000188_060--Hb_005000_080 Hb_000684_390 Hb_000684_390 Hb_000188_060--Hb_000684_390 Hb_003994_080 Hb_003994_080 Hb_000188_060--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000188_060--Hb_000140_060 Hb_000069_360 Hb_000069_360 Hb_000188_060--Hb_000069_360 Hb_002150_020 Hb_002150_020 Hb_005305_020--Hb_002150_020 Hb_004041_030 Hb_004041_030 Hb_005305_020--Hb_004041_030 Hb_055690_010 Hb_055690_010 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_004672_020 Hb_004672_020 Hb_005305_020--Hb_004672_020 Hb_001307_100 Hb_001307_100 Hb_005305_020--Hb_001307_100 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_005000_080--Hb_003994_080 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_138585_030 Hb_138585_030 Hb_005000_080--Hb_138585_030 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_001021_210 Hb_001021_210 Hb_005000_080--Hb_001021_210 Hb_001898_180 Hb_001898_180 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_000388_060 Hb_000388_060 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_020378_060--Hb_005489_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76817 13.6268 23.5593 20.7091 2.20198 3.00676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60642 10.8277 17.5908 5.80485 42.2825

CAGE analysis