Hb_003020_060

Information

Type -
Description -
Location Contig3020: 37436-39213
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04010g
description POPTRDRAFT_558036; hypothetical protein
nr
ID XP_012067035.1
description PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02948 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_060 0.0 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
2 Hb_000613_230 0.2638856345 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000710_090 0.2644428915 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
4 Hb_006487_040 0.2789981681 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
5 Hb_000567_400 0.3095081494 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_001546_160 0.3127767406 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_003992_050 0.3218729437 - - delta 9 desaturase, putative [Ricinus communis]
8 Hb_004410_040 0.3231592506 - - ATP binding protein, putative [Ricinus communis]
9 Hb_011242_020 0.3235172227 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_008453_130 0.3241207696 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
11 Hb_011671_190 0.3306612127 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
12 Hb_003786_080 0.3351764035 - - electron transporter, putative [Ricinus communis]
13 Hb_006916_060 0.3372135743 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
14 Hb_002986_140 0.3424943825 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
15 Hb_092703_010 0.3429735745 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
16 Hb_168440_010 0.3508842467 - - PREDICTED: peroxidase 9 [Jatropha curcas]
17 Hb_003121_010 0.3509319548 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
18 Hb_002045_050 0.3521164822 - - -
19 Hb_000028_150 0.3523431659 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
20 Hb_003638_040 0.3551302627 - - kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003020_060 Hb_003020_060 Hb_000613_230 Hb_000613_230 Hb_003020_060--Hb_000613_230 Hb_000710_090 Hb_000710_090 Hb_003020_060--Hb_000710_090 Hb_006487_040 Hb_006487_040 Hb_003020_060--Hb_006487_040 Hb_000567_400 Hb_000567_400 Hb_003020_060--Hb_000567_400 Hb_001546_160 Hb_001546_160 Hb_003020_060--Hb_001546_160 Hb_003992_050 Hb_003992_050 Hb_003020_060--Hb_003992_050 Hb_010366_010 Hb_010366_010 Hb_000613_230--Hb_010366_010 Hb_000613_230--Hb_001546_160 Hb_001019_070 Hb_001019_070 Hb_000613_230--Hb_001019_070 Hb_021443_030 Hb_021443_030 Hb_000613_230--Hb_021443_030 Hb_011242_020 Hb_011242_020 Hb_000613_230--Hb_011242_020 Hb_143714_010 Hb_143714_010 Hb_000710_090--Hb_143714_010 Hb_011671_190 Hb_011671_190 Hb_000710_090--Hb_011671_190 Hb_008453_130 Hb_008453_130 Hb_000710_090--Hb_008453_130 Hb_003786_080 Hb_003786_080 Hb_000710_090--Hb_003786_080 Hb_000424_040 Hb_000424_040 Hb_000710_090--Hb_000424_040 Hb_006487_040--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_006487_040--Hb_027654_070 Hb_006487_040--Hb_003786_080 Hb_002986_140 Hb_002986_140 Hb_006487_040--Hb_002986_140 Hb_002999_030 Hb_002999_030 Hb_006487_040--Hb_002999_030 Hb_000035_210 Hb_000035_210 Hb_006487_040--Hb_000035_210 Hb_007336_050 Hb_007336_050 Hb_000567_400--Hb_007336_050 Hb_000567_400--Hb_003786_080 Hb_000567_400--Hb_006487_040 Hb_000567_400--Hb_003992_050 Hb_002067_010 Hb_002067_010 Hb_000567_400--Hb_002067_010 Hb_000438_130 Hb_000438_130 Hb_000567_400--Hb_000438_130 Hb_001247_110 Hb_001247_110 Hb_001546_160--Hb_001247_110 Hb_002799_130 Hb_002799_130 Hb_001546_160--Hb_002799_130 Hb_000699_100 Hb_000699_100 Hb_001546_160--Hb_000699_100 Hb_002290_020 Hb_002290_020 Hb_001546_160--Hb_002290_020 Hb_001546_160--Hb_000424_040 Hb_001638_310 Hb_001638_310 Hb_001546_160--Hb_001638_310 Hb_002435_090 Hb_002435_090 Hb_003992_050--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_003992_050--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_003992_050--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_003992_050--Hb_140360_010 Hb_188739_010 Hb_188739_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0223457 0.0148874 0.208967 0 0.0167914 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0598815 0 0.0666159

CAGE analysis