Hb_007336_050

Information

Type -
Description -
Location Contig7336: 53790-55645
Sequence    

Annotation

kegg
ID rcu:RCOM_1589450
description hypothetical protein
nr
ID XP_012068296.1
description PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
swissprot
ID P0C7P8
description Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1
trembl
ID A0A067KZR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16098 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56172: 53793-55716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007336_050 0.0 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
2 Hb_000816_210 0.1609598558 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
3 Hb_000438_130 0.1779973939 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
4 Hb_002603_090 0.1807593797 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
5 Hb_011457_120 0.1865102301 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
6 Hb_003638_040 0.1875904174 - - kinesin heavy chain, putative [Ricinus communis]
7 Hb_029510_130 0.1908788141 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
8 Hb_003938_170 0.1944877512 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
9 Hb_001386_090 0.1994136679 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
10 Hb_002942_150 0.2006502086 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000638_260 0.2008777591 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
12 Hb_003430_040 0.2061412407 - - spermidine synthase 1, putative [Ricinus communis]
13 Hb_002817_010 0.2069595074 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
14 Hb_000207_140 0.2073371016 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
15 Hb_003397_030 0.2110391569 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
16 Hb_008406_100 0.2113010811 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
17 Hb_003992_050 0.2116996504 - - delta 9 desaturase, putative [Ricinus communis]
18 Hb_000206_030 0.2122249118 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
19 Hb_002078_120 0.2126916649 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
20 Hb_003874_010 0.213455865 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007336_050 Hb_007336_050 Hb_000816_210 Hb_000816_210 Hb_007336_050--Hb_000816_210 Hb_000438_130 Hb_000438_130 Hb_007336_050--Hb_000438_130 Hb_002603_090 Hb_002603_090 Hb_007336_050--Hb_002603_090 Hb_011457_120 Hb_011457_120 Hb_007336_050--Hb_011457_120 Hb_003638_040 Hb_003638_040 Hb_007336_050--Hb_003638_040 Hb_029510_130 Hb_029510_130 Hb_007336_050--Hb_029510_130 Hb_000207_140 Hb_000207_140 Hb_000816_210--Hb_000207_140 Hb_002435_090 Hb_002435_090 Hb_000816_210--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_000816_210--Hb_001975_050 Hb_000816_210--Hb_000438_130 Hb_188739_010 Hb_188739_010 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_001386_090 Hb_001386_090 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_001711_060 Hb_001711_060 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_002603_090--Hb_000207_140 Hb_002603_090--Hb_000816_210 Hb_002603_090--Hb_000438_130 Hb_002603_090--Hb_002435_090 Hb_002540_060 Hb_002540_060 Hb_002603_090--Hb_002540_060 Hb_002942_150 Hb_002942_150 Hb_011457_120--Hb_002942_150 Hb_000020_040 Hb_000020_040 Hb_011457_120--Hb_000020_040 Hb_059567_010 Hb_059567_010 Hb_011457_120--Hb_059567_010 Hb_004093_030 Hb_004093_030 Hb_011457_120--Hb_004093_030 Hb_000206_030 Hb_000206_030 Hb_011457_120--Hb_000206_030 Hb_001266_150 Hb_001266_150 Hb_011457_120--Hb_001266_150 Hb_002986_140 Hb_002986_140 Hb_003638_040--Hb_002986_140 Hb_002078_120 Hb_002078_120 Hb_003638_040--Hb_002078_120 Hb_000028_150 Hb_000028_150 Hb_003638_040--Hb_000028_150 Hb_000483_270 Hb_000483_270 Hb_003638_040--Hb_000483_270 Hb_007002_050 Hb_007002_050 Hb_003638_040--Hb_007002_050 Hb_002799_120 Hb_002799_120 Hb_003638_040--Hb_002799_120 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_029510_130--Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_029510_130--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_024973_020 Hb_024973_020 Hb_029510_130--Hb_024973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43357 0.294334 24.7562 4.60621 1.21483 2.04993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46291 0.363406 2.82298 0.472747 4.27202

CAGE analysis