Hb_002603_090

Information

Type -
Description -
Location Contig2603: 49792-52970
Sequence    

Annotation

kegg
ID sly:101254210
description GDSL esterase/lipase CPRD49-like
nr
ID XP_011035964.1
description PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
swissprot
ID Q9SRM5
description GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1
trembl
ID K4C5W1
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g051720.2 PE=4 SV=1
Gene Ontology
ID GO:0048046
description gdsl esterase lipase cprd49-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27136: 49852-53052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_090 0.0 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
2 Hb_000207_140 0.1576815845 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
3 Hb_000816_210 0.1670350891 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
4 Hb_000438_130 0.1719340404 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
5 Hb_007336_050 0.1807593797 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
6 Hb_002435_090 0.1836793934 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
7 Hb_002540_060 0.1842283831 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
8 Hb_001862_070 0.1863971708 - - hypothetical protein RCOM_1155060 [Ricinus communis]
9 Hb_001386_090 0.1872511798 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
10 Hb_000340_410 0.1902672881 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_000169_070 0.192472129 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
12 Hb_001975_050 0.1925789185 - - Tyrosine-specific transport protein, putative [Ricinus communis]
13 Hb_000123_370 0.1936653243 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
14 Hb_000538_130 0.1951118116 - - phytoene synthase 2 [Manihot esculenta]
15 Hb_027654_070 0.1973145741 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001343_120 0.1979813008 - - conserved hypothetical protein [Ricinus communis]
17 Hb_188739_010 0.1991319523 - - protein binding protein, putative [Ricinus communis]
18 Hb_003992_050 0.2015978389 - - delta 9 desaturase, putative [Ricinus communis]
19 Hb_003397_030 0.2087101102 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_002078_120 0.2106039471 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_090 Hb_002603_090 Hb_000207_140 Hb_000207_140 Hb_002603_090--Hb_000207_140 Hb_000816_210 Hb_000816_210 Hb_002603_090--Hb_000816_210 Hb_000438_130 Hb_000438_130 Hb_002603_090--Hb_000438_130 Hb_007336_050 Hb_007336_050 Hb_002603_090--Hb_007336_050 Hb_002435_090 Hb_002435_090 Hb_002603_090--Hb_002435_090 Hb_002540_060 Hb_002540_060 Hb_002603_090--Hb_002540_060 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_000207_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000207_140--Hb_000816_210 Hb_001975_050 Hb_001975_050 Hb_000207_140--Hb_001975_050 Hb_000816_210--Hb_002435_090 Hb_000816_210--Hb_001975_050 Hb_000816_210--Hb_000438_130 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_001386_090 Hb_001386_090 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_001711_060 Hb_001711_060 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_007336_050--Hb_000816_210 Hb_007336_050--Hb_000438_130 Hb_011457_120 Hb_011457_120 Hb_007336_050--Hb_011457_120 Hb_003638_040 Hb_003638_040 Hb_007336_050--Hb_003638_040 Hb_029510_130 Hb_029510_130 Hb_007336_050--Hb_029510_130 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_001343_120 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_002540_060--Hb_001343_120 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002540_060--Hb_002435_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5155 0.26509 26.8827 4.62894 2.81052 1.30539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33223 1.52384 0.607295 0.0576698 7.51424

CAGE analysis