Hb_000206_030

Information

Type -
Description -
Location Contig206: 28131-31599
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11280g
description POPTRDRAFT_868739; hypothetical protein
nr
ID XP_012079202.1
description PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12364 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21218: 27684-32212 , PASA_asmbl_21219: 31190-31297
cDNA
(Sanger)
(ID:Location)		 010_J21.ab1: 31113-32212

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_030 0.0 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]
2 Hb_001266_150 0.1679299356 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
3 Hb_011457_120 0.1713627654 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
4 Hb_011004_050 0.1757470457 - - PREDICTED: kinesin-13A [Jatropha curcas]
5 Hb_014320_010 0.1778165848 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]
6 Hb_000224_080 0.1792861818 - - hypothetical protein RCOM_0510880 [Ricinus communis]
7 Hb_000020_040 0.1956045268 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
8 Hb_025214_120 0.2011272445 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
9 Hb_000230_190 0.2014471394 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
10 Hb_004093_030 0.2069729246 - - hypothetical protein RCOM_1406750 [Ricinus communis]
11 Hb_007336_050 0.2122249118 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
12 Hb_000105_100 0.2134640229 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
13 Hb_004079_090 0.2134692462 - - hypothetical protein RCOM_1053120 [Ricinus communis]
14 Hb_005144_120 0.2139298675 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
15 Hb_001510_040 0.2166499256 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
16 Hb_002045_090 0.2169889862 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
17 Hb_002942_150 0.2221717347 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_002078_120 0.2227041229 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
19 Hb_010288_030 0.2239987897 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
20 Hb_003020_190 0.2254783484 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_030 Hb_000206_030 Hb_001266_150 Hb_001266_150 Hb_000206_030--Hb_001266_150 Hb_011457_120 Hb_011457_120 Hb_000206_030--Hb_011457_120 Hb_011004_050 Hb_011004_050 Hb_000206_030--Hb_011004_050 Hb_014320_010 Hb_014320_010 Hb_000206_030--Hb_014320_010 Hb_000224_080 Hb_000224_080 Hb_000206_030--Hb_000224_080 Hb_000020_040 Hb_000020_040 Hb_000206_030--Hb_000020_040 Hb_000932_110 Hb_000932_110 Hb_001266_150--Hb_000932_110 Hb_059567_010 Hb_059567_010 Hb_001266_150--Hb_059567_010 Hb_004093_030 Hb_004093_030 Hb_001266_150--Hb_004093_030 Hb_001140_190 Hb_001140_190 Hb_001266_150--Hb_001140_190 Hb_000352_010 Hb_000352_010 Hb_001266_150--Hb_000352_010 Hb_010288_030 Hb_010288_030 Hb_001266_150--Hb_010288_030 Hb_002942_150 Hb_002942_150 Hb_011457_120--Hb_002942_150 Hb_011457_120--Hb_000020_040 Hb_011457_120--Hb_059567_010 Hb_011457_120--Hb_004093_030 Hb_011457_120--Hb_001266_150 Hb_000152_440 Hb_000152_440 Hb_011004_050--Hb_000152_440 Hb_005144_120 Hb_005144_120 Hb_011004_050--Hb_005144_120 Hb_001579_300 Hb_001579_300 Hb_011004_050--Hb_001579_300 Hb_000086_210 Hb_000086_210 Hb_011004_050--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_011004_050--Hb_005563_010 Hb_005496_020 Hb_005496_020 Hb_011004_050--Hb_005496_020 Hb_000340_410 Hb_000340_410 Hb_014320_010--Hb_000340_410 Hb_188063_030 Hb_188063_030 Hb_014320_010--Hb_188063_030 Hb_003160_070 Hb_003160_070 Hb_014320_010--Hb_003160_070 Hb_014320_010--Hb_000224_080 Hb_160256_010 Hb_160256_010 Hb_014320_010--Hb_160256_010 Hb_000920_010 Hb_000920_010 Hb_014320_010--Hb_000920_010 Hb_002045_090 Hb_002045_090 Hb_000224_080--Hb_002045_090 Hb_001123_110 Hb_001123_110 Hb_000224_080--Hb_001123_110 Hb_003397_030 Hb_003397_030 Hb_000224_080--Hb_003397_030 Hb_000958_120 Hb_000958_120 Hb_000224_080--Hb_000958_120 Hb_005271_140 Hb_005271_140 Hb_000224_080--Hb_005271_140 Hb_004079_090 Hb_004079_090 Hb_000020_040--Hb_004079_090 Hb_001755_040 Hb_001755_040 Hb_000020_040--Hb_001755_040 Hb_002232_310 Hb_002232_310 Hb_000020_040--Hb_002232_310 Hb_011360_130 Hb_011360_130 Hb_000020_040--Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_000020_040--Hb_014497_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8393 0.169682 9.04102 5.07357 0.135566 0.368515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.988448 0.367239 0.733506 0.0947141 2.26963

CAGE analysis