Hb_000710_090

Information

Type -
Description -
Location Contig710: 98331-98834
Sequence    

Annotation

kegg
ID bdi:104583249
description uncharacterized LOC104583249
nr
ID XP_010233370.1
description PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
swissprot
ID -
description -
trembl
ID B9SCP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55229: 97876-98692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_090 0.0 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
2 Hb_143714_010 0.178187987 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Populus euphratica]
3 Hb_003020_060 0.2644428915 - - PREDICTED: low-temperature-induced 65 kDa protein [Jatropha curcas]
4 Hb_011671_190 0.2680489351 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_008453_130 0.2944370888 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
6 Hb_003786_080 0.2990743387 - - electron transporter, putative [Ricinus communis]
7 Hb_000424_040 0.3072170259 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
8 Hb_001546_160 0.3081400081 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001587_170 0.3230438411 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
10 Hb_092703_010 0.3263091794 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
11 Hb_000699_100 0.3266727926 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
12 Hb_006487_040 0.3271055595 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
13 Hb_002972_030 0.3357497056 - - protein with unknown function [Ricinus communis]
14 Hb_002493_010 0.3378201134 - - -
15 Hb_003994_310 0.3384729984 transcription factor TF Family: PHD conserved hypothetical protein [Ricinus communis]
16 Hb_024399_020 0.33973625 - - electron transporter, putative [Ricinus communis]
17 Hb_087203_010 0.3432270271 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
18 Hb_000567_400 0.3512246421 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_000049_220 0.3522307627 - - ammonium transporter, putative [Ricinus communis]
20 Hb_005016_140 0.3555702612 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_090 Hb_000710_090 Hb_143714_010 Hb_143714_010 Hb_000710_090--Hb_143714_010 Hb_003020_060 Hb_003020_060 Hb_000710_090--Hb_003020_060 Hb_011671_190 Hb_011671_190 Hb_000710_090--Hb_011671_190 Hb_008453_130 Hb_008453_130 Hb_000710_090--Hb_008453_130 Hb_003786_080 Hb_003786_080 Hb_000710_090--Hb_003786_080 Hb_000424_040 Hb_000424_040 Hb_000710_090--Hb_000424_040 Hb_143714_010--Hb_008453_130 Hb_003994_310 Hb_003994_310 Hb_143714_010--Hb_003994_310 Hb_143714_010--Hb_011671_190 Hb_001587_170 Hb_001587_170 Hb_143714_010--Hb_001587_170 Hb_000049_220 Hb_000049_220 Hb_143714_010--Hb_000049_220 Hb_000613_230 Hb_000613_230 Hb_003020_060--Hb_000613_230 Hb_006487_040 Hb_006487_040 Hb_003020_060--Hb_006487_040 Hb_000567_400 Hb_000567_400 Hb_003020_060--Hb_000567_400 Hb_001546_160 Hb_001546_160 Hb_003020_060--Hb_001546_160 Hb_003992_050 Hb_003992_050 Hb_003020_060--Hb_003992_050 Hb_011671_190--Hb_000424_040 Hb_092703_010 Hb_092703_010 Hb_011671_190--Hb_092703_010 Hb_000699_100 Hb_000699_100 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_169209_010 Hb_169209_010 Hb_011671_190--Hb_169209_010 Hb_000809_240 Hb_000809_240 Hb_011671_190--Hb_000809_240 Hb_008453_130--Hb_001546_160 Hb_000025_610 Hb_000025_610 Hb_008453_130--Hb_000025_610 Hb_000413_290 Hb_000413_290 Hb_008453_130--Hb_000413_290 Hb_087203_010 Hb_087203_010 Hb_008453_130--Hb_087203_010 Hb_000035_210 Hb_000035_210 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_000977_170 Hb_000977_170 Hb_003786_080--Hb_000977_170 Hb_003786_080--Hb_006487_040 Hb_000802_050 Hb_000802_050 Hb_003786_080--Hb_000802_050 Hb_000424_040--Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000424_040--Hb_000809_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457831 0.06442 2.57185 0 0.0697795 0.384028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.346 0.0581407 1.97433

CAGE analysis