Hb_003994_310

Information

Type transcription factor
Description TF Family: PHD
Location Contig3994: 297124-300490
Sequence    

Annotation

kegg
ID rcu:RCOM_1574050
description hypothetical protein
nr
ID XP_002513330.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4KBP5
description Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1
trembl
ID B9RHW1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1574050 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein chromatin remodeling 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_310 0.0 transcription factor TF Family: PHD conserved hypothetical protein [Ricinus communis]
2 Hb_011671_190 0.3048927876 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_143714_010 0.3145479685 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Populus euphratica]
4 Hb_002290_020 0.3206968681 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002928_040 0.3217451185 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
6 Hb_000710_090 0.3384729984 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
7 Hb_000516_050 0.338881272 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
8 Hb_001519_170 0.3453064716 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
9 Hb_002817_010 0.3465904247 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
10 Hb_000116_070 0.3483167212 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
11 Hb_000699_100 0.3488163973 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Jatropha curcas]
12 Hb_000260_430 0.3490223616 - - ribosomal protein L17, putative [Ricinus communis]
13 Hb_006916_060 0.3537721936 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
14 Hb_000431_150 0.3540059864 - - ribosomal protein L27, putative [Ricinus communis]
15 Hb_007694_060 0.3582514064 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
16 Hb_002253_090 0.358251717 - - Chitinase 1 precursor, putative [Ricinus communis]
17 Hb_168440_010 0.3586461467 - - PREDICTED: peroxidase 9 [Jatropha curcas]
18 Hb_001711_060 0.358795464 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
19 Hb_000005_130 0.3592690427 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
20 Hb_003752_060 0.3596572462 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_310 Hb_003994_310 Hb_011671_190 Hb_011671_190 Hb_003994_310--Hb_011671_190 Hb_143714_010 Hb_143714_010 Hb_003994_310--Hb_143714_010 Hb_002290_020 Hb_002290_020 Hb_003994_310--Hb_002290_020 Hb_002928_040 Hb_002928_040 Hb_003994_310--Hb_002928_040 Hb_000710_090 Hb_000710_090 Hb_003994_310--Hb_000710_090 Hb_000516_050 Hb_000516_050 Hb_003994_310--Hb_000516_050 Hb_000424_040 Hb_000424_040 Hb_011671_190--Hb_000424_040 Hb_092703_010 Hb_092703_010 Hb_011671_190--Hb_092703_010 Hb_000699_100 Hb_000699_100 Hb_011671_190--Hb_000699_100 Hb_009851_010 Hb_009851_010 Hb_011671_190--Hb_009851_010 Hb_169209_010 Hb_169209_010 Hb_011671_190--Hb_169209_010 Hb_000809_240 Hb_000809_240 Hb_011671_190--Hb_000809_240 Hb_143714_010--Hb_000710_090 Hb_008453_130 Hb_008453_130 Hb_143714_010--Hb_008453_130 Hb_143714_010--Hb_011671_190 Hb_001587_170 Hb_001587_170 Hb_143714_010--Hb_001587_170 Hb_000049_220 Hb_000049_220 Hb_143714_010--Hb_000049_220 Hb_000431_150 Hb_000431_150 Hb_002290_020--Hb_000431_150 Hb_002290_020--Hb_000699_100 Hb_001638_310 Hb_001638_310 Hb_002290_020--Hb_001638_310 Hb_005016_140 Hb_005016_140 Hb_002290_020--Hb_005016_140 Hb_021576_080 Hb_021576_080 Hb_002290_020--Hb_021576_080 Hb_000260_430 Hb_000260_430 Hb_002290_020--Hb_000260_430 Hb_005271_160 Hb_005271_160 Hb_002928_040--Hb_005271_160 Hb_000016_310 Hb_000016_310 Hb_002928_040--Hb_000016_310 Hb_000690_060 Hb_000690_060 Hb_002928_040--Hb_000690_060 Hb_002105_010 Hb_002105_010 Hb_002928_040--Hb_002105_010 Hb_001232_150 Hb_001232_150 Hb_002928_040--Hb_001232_150 Hb_000023_370 Hb_000023_370 Hb_002928_040--Hb_000023_370 Hb_003020_060 Hb_003020_060 Hb_000710_090--Hb_003020_060 Hb_000710_090--Hb_011671_190 Hb_000710_090--Hb_008453_130 Hb_003786_080 Hb_003786_080 Hb_000710_090--Hb_003786_080 Hb_000710_090--Hb_000424_040 Hb_017358_070 Hb_017358_070 Hb_000516_050--Hb_017358_070 Hb_001227_070 Hb_001227_070 Hb_000516_050--Hb_001227_070 Hb_121089_050 Hb_121089_050 Hb_000516_050--Hb_121089_050 Hb_047418_010 Hb_047418_010 Hb_000516_050--Hb_047418_010 Hb_000454_040 Hb_000454_040 Hb_000516_050--Hb_000454_040 Hb_004236_040 Hb_004236_040 Hb_000516_050--Hb_004236_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0709876 0 0.141025 0.00891123 0 0.0111786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0409402 0.0386741 0 0.0861719

CAGE analysis