Hb_000016_310

Information

Type -
Description -
Location Contig16: 338789-340110
Sequence    

Annotation

kegg
ID rcu:RCOM_1497090
description protein binding protein, putative
nr
ID XP_002510840.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q0WUQ1
description BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1
trembl
ID B9R9G5
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1497090 PE=4 SV=1
Gene Ontology
ID GO:0051087
description bag family molecular chaperone regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14299: 340012-340140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_310 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002915_010 0.0948142986 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
3 Hb_000680_010 0.0952360721 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
4 Hb_003883_010 0.096916165 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
5 Hb_002107_050 0.0972436581 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_000676_060 0.1023203459 - - Sec14 cytosolic factor, putative [Ricinus communis]
7 Hb_001021_210 0.1112570984 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_012779_080 0.1165370214 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
9 Hb_000320_190 0.1166883242 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_000094_100 0.1210869846 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
11 Hb_160271_010 0.1228905634 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
12 Hb_000260_710 0.1241977376 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
13 Hb_009288_040 0.1274173782 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
14 Hb_005000_080 0.1276909944 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
15 Hb_002150_140 0.1279976987 - - PREDICTED: girdin-like [Jatropha curcas]
16 Hb_010620_050 0.1294325863 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
17 Hb_004586_430 0.1303005852 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
18 Hb_001430_020 0.132546079 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
19 Hb_010344_020 0.1327418509 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
20 Hb_003994_080 0.1346810479 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_310 Hb_000016_310 Hb_002915_010 Hb_002915_010 Hb_000016_310--Hb_002915_010 Hb_000680_010 Hb_000680_010 Hb_000016_310--Hb_000680_010 Hb_003883_010 Hb_003883_010 Hb_000016_310--Hb_003883_010 Hb_002107_050 Hb_002107_050 Hb_000016_310--Hb_002107_050 Hb_000676_060 Hb_000676_060 Hb_000016_310--Hb_000676_060 Hb_001021_210 Hb_001021_210 Hb_000016_310--Hb_001021_210 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_002915_010--Hb_000680_010 Hb_000680_010--Hb_003883_010 Hb_160271_010 Hb_160271_010 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_000680_010--Hb_002107_050 Hb_000680_010--Hb_000320_190 Hb_003883_010--Hb_002107_050 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_160271_010 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_000676_060--Hb_002915_010 Hb_022693_130 Hb_022693_130 Hb_000676_060--Hb_022693_130 Hb_002150_140 Hb_002150_140 Hb_000676_060--Hb_002150_140 Hb_000676_060--Hb_002107_050 Hb_000676_060--Hb_012779_080 Hb_003994_080 Hb_003994_080 Hb_001021_210--Hb_003994_080 Hb_001021_210--Hb_010620_050 Hb_003752_090 Hb_003752_090 Hb_001021_210--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_001021_210--Hb_005000_080 Hb_001021_210--Hb_002107_050 Hb_007594_080 Hb_007594_080 Hb_001021_210--Hb_007594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7883 14.5025 50.7557 26.7215 7.59781 11.3214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45676 12.5085 10.9236 4.82363 49.3638

CAGE analysis