Hb_001587_170

Information

Type -
Description -
Location Contig1587: 96387-98744
Sequence    

Annotation

kegg
ID rcu:RCOM_1573430
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID KJB68037.1
description hypothetical protein B456_010G223200, partial [Gossypium raimondii]
swissprot
ID Q8W3Z1
description Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1
trembl
ID A0A0D2RC35
description Gossypium raimondii chromosome 10, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_010G223200 PE=4 SV=1
Gene Ontology
ID GO:0003824
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_170 0.0 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
2 Hb_000367_250 0.1397570175 - - unnamed protein product [Vitis vinifera]
3 Hb_003164_010 0.2155025833 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_001728_120 0.2500605489 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
5 Hb_001300_250 0.2860613143 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
6 Hb_001959_090 0.3018055675 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_000454_040 0.3073811671 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
8 Hb_000808_200 0.3129669121 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1-like [Jatropha curcas]
9 Hb_003786_080 0.313884486 - - electron transporter, putative [Ricinus communis]
10 Hb_008279_030 0.31920578 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003121_010 0.3205448557 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
12 Hb_000710_090 0.3230438411 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
13 Hb_000834_070 0.3242542113 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
14 Hb_001488_190 0.3257983405 - - alpha-amylase, putative [Ricinus communis]
15 Hb_012092_020 0.328338254 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_002475_080 0.3295491514 transcription factor TF Family: PHD PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Jatropha curcas]
17 Hb_000856_270 0.3300374573 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
18 Hb_000567_400 0.3333382641 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_000977_170 0.3366945815 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_004007_140 0.3387691872 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001587_170 Hb_001587_170 Hb_000367_250 Hb_000367_250 Hb_001587_170--Hb_000367_250 Hb_003164_010 Hb_003164_010 Hb_001587_170--Hb_003164_010 Hb_001728_120 Hb_001728_120 Hb_001587_170--Hb_001728_120 Hb_001300_250 Hb_001300_250 Hb_001587_170--Hb_001300_250 Hb_001959_090 Hb_001959_090 Hb_001587_170--Hb_001959_090 Hb_000454_040 Hb_000454_040 Hb_001587_170--Hb_000454_040 Hb_000367_250--Hb_003164_010 Hb_000120_630 Hb_000120_630 Hb_000367_250--Hb_000120_630 Hb_000856_270 Hb_000856_270 Hb_000367_250--Hb_000856_270 Hb_004007_140 Hb_004007_140 Hb_000367_250--Hb_004007_140 Hb_008279_030 Hb_008279_030 Hb_000367_250--Hb_008279_030 Hb_003164_010--Hb_001728_120 Hb_003164_010--Hb_004007_140 Hb_002045_080 Hb_002045_080 Hb_003164_010--Hb_002045_080 Hb_003164_010--Hb_000856_270 Hb_001728_120--Hb_001300_250 Hb_001728_120--Hb_002045_080 Hb_003073_090 Hb_003073_090 Hb_001728_120--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001728_120--Hb_000834_070 Hb_001300_250--Hb_003073_090 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_001300_250--Hb_003164_010 Hb_000977_170 Hb_000977_170 Hb_001959_090--Hb_000977_170 Hb_004236_040 Hb_004236_040 Hb_001959_090--Hb_004236_040 Hb_058620_080 Hb_058620_080 Hb_001959_090--Hb_058620_080 Hb_001579_280 Hb_001579_280 Hb_001959_090--Hb_001579_280 Hb_000130_330 Hb_000130_330 Hb_001959_090--Hb_000130_330 Hb_003786_080 Hb_003786_080 Hb_001959_090--Hb_003786_080 Hb_001488_190 Hb_001488_190 Hb_000454_040--Hb_001488_190 Hb_005622_020 Hb_005622_020 Hb_000454_040--Hb_005622_020 Hb_004724_170 Hb_004724_170 Hb_000454_040--Hb_004724_170 Hb_002028_180 Hb_002028_180 Hb_000454_040--Hb_002028_180 Hb_007534_060 Hb_007534_060 Hb_000454_040--Hb_007534_060 Hb_000312_050 Hb_000312_050 Hb_000454_040--Hb_000312_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.101921 0.031523 0 0.0166017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0629711 0 0.0700382

CAGE analysis