Hb_003073_090

Information

Type transcription factor
Description TF Family: B3
Location Contig3073: 74463-96221
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23920g
description hypothetical protein
nr
ID XP_006385100.1
description hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID B9N0J6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23920g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_090 0.0 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
2 Hb_001300_250 0.2046646203 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
3 Hb_001728_120 0.2230264732 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
4 Hb_000001_100 0.2465011383 - - -
5 Hb_005687_080 0.2618019367 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_002173_050 0.2660026298 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_041813_080 0.2940348939 - - -
8 Hb_003197_010 0.2961928299 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002073_110 0.3029360227 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000834_070 0.3035828549 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_002045_080 0.30556622 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
12 Hb_012833_020 0.3063673539 - - -
13 Hb_001310_090 0.3315744397 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
14 Hb_143748_010 0.3341057677 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
15 Hb_002534_010 0.3360821902 - - PREDICTED: expansin-A1-like [Jatropha curcas]
16 Hb_001488_190 0.3418400434 - - alpha-amylase, putative [Ricinus communis]
17 Hb_000077_360 0.3420463677 - - sugar transporter, putative [Ricinus communis]
18 Hb_004102_010 0.3503978857 - - F-box family protein [Theobroma cacao]
19 Hb_002150_070 0.3512931364 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
20 Hb_001310_040 0.3538951272 transcription factor TF Family: TAZ transcription cofactor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003073_090 Hb_003073_090 Hb_001300_250 Hb_001300_250 Hb_003073_090--Hb_001300_250 Hb_001728_120 Hb_001728_120 Hb_003073_090--Hb_001728_120 Hb_000001_100 Hb_000001_100 Hb_003073_090--Hb_000001_100 Hb_005687_080 Hb_005687_080 Hb_003073_090--Hb_005687_080 Hb_002173_050 Hb_002173_050 Hb_003073_090--Hb_002173_050 Hb_041813_080 Hb_041813_080 Hb_003073_090--Hb_041813_080 Hb_001300_250--Hb_001728_120 Hb_000834_070 Hb_000834_070 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_003164_010 Hb_003164_010 Hb_001300_250--Hb_003164_010 Hb_001728_120--Hb_003164_010 Hb_002045_080 Hb_002045_080 Hb_001728_120--Hb_002045_080 Hb_001728_120--Hb_000834_070 Hb_001587_170 Hb_001587_170 Hb_001728_120--Hb_001587_170 Hb_012833_020 Hb_012833_020 Hb_000001_100--Hb_012833_020 Hb_000001_100--Hb_041813_080 Hb_000001_100--Hb_001300_250 Hb_000245_120 Hb_000245_120 Hb_000001_100--Hb_000245_120 Hb_000001_100--Hb_002173_050 Hb_002875_060 Hb_002875_060 Hb_005687_080--Hb_002875_060 Hb_004102_010 Hb_004102_010 Hb_005687_080--Hb_004102_010 Hb_005337_110 Hb_005337_110 Hb_005687_080--Hb_005337_110 Hb_005687_080--Hb_003197_010 Hb_001229_020 Hb_001229_020 Hb_005687_080--Hb_001229_020 Hb_002173_050--Hb_002045_080 Hb_000077_360 Hb_000077_360 Hb_002173_050--Hb_000077_360 Hb_001310_090 Hb_001310_090 Hb_002173_050--Hb_001310_090 Hb_002173_050--Hb_012833_020 Hb_003878_220 Hb_003878_220 Hb_002173_050--Hb_003878_220 Hb_041813_080--Hb_002073_110 Hb_041813_080--Hb_000245_120 Hb_143769_010 Hb_143769_010 Hb_041813_080--Hb_143769_010 Hb_002534_010 Hb_002534_010 Hb_041813_080--Hb_002534_010 Hb_118034_010 Hb_118034_010 Hb_041813_080--Hb_118034_010 Hb_005742_010 Hb_005742_010 Hb_041813_080--Hb_005742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00697356 0.0235449 0.00472014 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0323058 0 0.0360467

CAGE analysis