Hb_003878_220

Information

Type -
Description -
Location Contig3878: 154400-155776
Sequence    

Annotation

kegg
ID rcu:RCOM_1538620
description vacuolar protein sorting, putative
nr
ID XP_002519636.1
description vacuolar protein sorting, putative [Ricinus communis]
swissprot
ID Q94KJ7
description Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1
trembl
ID B9S0W7
description Vacuolar protein sorting, putative OS=Ricinus communis GN=RCOM_1538620 PE=4 SV=1
Gene Ontology
ID GO:0006904
description vacuolar protein-sorting-associated protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38911: 143977-155089 , PASA_asmbl_38912: 155284-155501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_220 0.0 - - vacuolar protein sorting, putative [Ricinus communis]
2 Hb_006153_180 0.1627212956 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
3 Hb_005976_010 0.2144887791 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
4 Hb_011861_090 0.2168074527 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
5 Hb_008790_040 0.2175046222 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
6 Hb_000077_360 0.2197213538 - - sugar transporter, putative [Ricinus communis]
7 Hb_000115_250 0.2222563951 - - PREDICTED: endonuclease 2 [Jatropha curcas]
8 Hb_006788_040 0.2230303434 - - calmodulin, putative [Ricinus communis]
9 Hb_000529_010 0.2247314806 - - cyclin d, putative [Ricinus communis]
10 Hb_000975_200 0.231123936 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
11 Hb_000165_200 0.2348399888 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_003050_030 0.2467211426 - - Calcyclin-binding protein, putative [Ricinus communis]
13 Hb_000394_050 0.2485039208 - - -
14 Hb_005784_060 0.2507672747 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
15 Hb_012707_010 0.2526680617 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
16 Hb_003878_050 0.2605685115 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
17 Hb_000086_290 0.2607265651 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
18 Hb_132840_070 0.2608118689 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
19 Hb_000696_070 0.2616906485 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
20 Hb_029223_040 0.2618738211 - - s-adenosylmethionine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003878_220 Hb_003878_220 Hb_006153_180 Hb_006153_180 Hb_003878_220--Hb_006153_180 Hb_005976_010 Hb_005976_010 Hb_003878_220--Hb_005976_010 Hb_011861_090 Hb_011861_090 Hb_003878_220--Hb_011861_090 Hb_008790_040 Hb_008790_040 Hb_003878_220--Hb_008790_040 Hb_000077_360 Hb_000077_360 Hb_003878_220--Hb_000077_360 Hb_000115_250 Hb_000115_250 Hb_003878_220--Hb_000115_250 Hb_006153_180--Hb_008790_040 Hb_000975_200 Hb_000975_200 Hb_006153_180--Hb_000975_200 Hb_006153_180--Hb_011861_090 Hb_000069_150 Hb_000069_150 Hb_006153_180--Hb_000069_150 Hb_002909_110 Hb_002909_110 Hb_006153_180--Hb_002909_110 Hb_005976_010--Hb_000115_250 Hb_000580_110 Hb_000580_110 Hb_005976_010--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_005976_010--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_005976_010--Hb_029223_040 Hb_000438_120 Hb_000438_120 Hb_005976_010--Hb_000438_120 Hb_012707_010 Hb_012707_010 Hb_005976_010--Hb_012707_010 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_000302_320 Hb_000302_320 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_010883_180 Hb_010883_180 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_158092_040 Hb_158092_040 Hb_008790_040--Hb_158092_040 Hb_001310_050 Hb_001310_050 Hb_008790_040--Hb_001310_050 Hb_008066_080 Hb_008066_080 Hb_008790_040--Hb_008066_080 Hb_006889_030 Hb_006889_030 Hb_008790_040--Hb_006889_030 Hb_002301_110 Hb_002301_110 Hb_008790_040--Hb_002301_110 Hb_132840_070 Hb_132840_070 Hb_000077_360--Hb_132840_070 Hb_000106_030 Hb_000106_030 Hb_000077_360--Hb_000106_030 Hb_000077_360--Hb_005976_010 Hb_007534_060 Hb_007534_060 Hb_000077_360--Hb_007534_060 Hb_003197_010 Hb_003197_010 Hb_000077_360--Hb_003197_010 Hb_000477_040 Hb_000477_040 Hb_000077_360--Hb_000477_040 Hb_008143_040 Hb_008143_040 Hb_000115_250--Hb_008143_040 Hb_004957_050 Hb_004957_050 Hb_000115_250--Hb_004957_050 Hb_000115_250--Hb_000580_110 Hb_007590_100 Hb_007590_100 Hb_000115_250--Hb_007590_100 Hb_000115_250--Hb_029223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0374456 0.20812 1.25726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0805548 0.422032 0.495829 0.466918

CAGE analysis