Hb_166635_010

Information

Type -
Description -
Location Contig166635: 141-868
Sequence    

Annotation

kegg
ID rcu:RCOM_1411850
description ptm1, putative
nr
ID XP_002528616.1
description ptm1, putative [Ricinus communis]
swissprot
ID Q28EW0
description Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1
trembl
ID B9SRJ7
description Ptm1, putative OS=Ricinus communis GN=RCOM_1411850 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 87b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166635_010 0.0 - - ptm1, putative [Ricinus communis]
2 Hb_011861_090 0.1384363161 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
3 Hb_001366_110 0.1759351612 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000054_010 0.1854769391 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000236_290 0.1929564859 - - organic anion transporter, putative [Ricinus communis]
6 Hb_000302_320 0.1953121757 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
7 Hb_004052_190 0.1992794401 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
8 Hb_000389_040 0.1995169761 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
9 Hb_000108_180 0.2063091494 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
10 Hb_050229_010 0.2076750288 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_019516_070 0.2080417333 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
12 Hb_000544_190 0.2089796198 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_150486_010 0.2105652683 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
14 Hb_012090_030 0.2122283425 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
15 Hb_006002_050 0.2123199746 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
16 Hb_007760_020 0.2151820634 - - PREDICTED: expansin-A1 [Populus euphratica]
17 Hb_000997_080 0.2162475545 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
18 Hb_001541_060 0.2162599518 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001534_140 0.2173820489 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
20 Hb_010142_060 0.2176129117 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_166635_010 Hb_166635_010 Hb_011861_090 Hb_011861_090 Hb_166635_010--Hb_011861_090 Hb_001366_110 Hb_001366_110 Hb_166635_010--Hb_001366_110 Hb_000054_010 Hb_000054_010 Hb_166635_010--Hb_000054_010 Hb_000236_290 Hb_000236_290 Hb_166635_010--Hb_000236_290 Hb_000302_320 Hb_000302_320 Hb_166635_010--Hb_000302_320 Hb_004052_190 Hb_004052_190 Hb_166635_010--Hb_004052_190 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_010883_180 Hb_010883_180 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_000236_230 Hb_000236_230 Hb_001366_110--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001366_110--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_001366_110--Hb_000130_350 Hb_000108_180 Hb_000108_180 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060 Hb_030565_100 Hb_030565_100 Hb_000054_010--Hb_030565_100 Hb_000054_010--Hb_010883_180 Hb_001186_110 Hb_001186_110 Hb_000054_010--Hb_001186_110 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_174541_030 Hb_174541_030 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040 Hb_019516_070 Hb_019516_070 Hb_000236_290--Hb_019516_070 Hb_003177_040 Hb_003177_040 Hb_000236_290--Hb_003177_040 Hb_000236_290--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_000236_290--Hb_008461_060 Hb_005295_020 Hb_005295_020 Hb_000236_290--Hb_005295_020 Hb_001699_080 Hb_001699_080 Hb_000236_290--Hb_001699_080 Hb_002759_030 Hb_002759_030 Hb_000302_320--Hb_002759_030 Hb_000302_320--Hb_000544_190 Hb_000302_320--Hb_000236_290 Hb_002783_280 Hb_002783_280 Hb_000302_320--Hb_002783_280 Hb_000009_280 Hb_000009_280 Hb_000302_320--Hb_000009_280 Hb_004052_190--Hb_000108_180 Hb_004052_190--Hb_008461_060 Hb_004052_190--Hb_002759_030 Hb_001001_070 Hb_001001_070 Hb_004052_190--Hb_001001_070 Hb_000251_120 Hb_000251_120 Hb_004052_190--Hb_000251_120 Hb_004052_190--Hb_003177_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133121 0.365571 3.68872 25.076 0.514322 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.93842 1.59851 9.20475

CAGE analysis