Hb_004052_190

Information

Type -
Description -
Location Contig4052: 190886-199045
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07120g
description phytochelatin synthetase-like family protein
nr
ID XP_012080413.1
description PREDICTED: COBRA-like protein 4 [Jatropha curcas]
swissprot
ID Q9LFW3
description COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2
trembl
ID F6GTE0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05060 PE=4 SV=1
Gene Ontology
ID GO:0005774
description cobra-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_190 0.0 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
2 Hb_000108_180 0.1480587155 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
3 Hb_008461_060 0.1500795361 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
4 Hb_002759_030 0.1503119279 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
5 Hb_001001_070 0.1528483298 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
6 Hb_000251_120 0.1584030769 - - O-acetyltransferase, putative [Ricinus communis]
7 Hb_003177_040 0.160364644 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
8 Hb_000236_290 0.1672853492 - - organic anion transporter, putative [Ricinus communis]
9 Hb_002081_020 0.1680465467 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
10 Hb_001235_120 0.1685234227 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
11 Hb_001279_400 0.1690999539 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
12 Hb_158092_050 0.1694408696 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
13 Hb_143748_010 0.1696126323 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
14 Hb_000358_060 0.1701014138 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
15 Hb_000367_080 0.1735164693 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
16 Hb_001195_710 0.1752362753 - - glycosyltransferase family GT8 protein [Populus deltoides]
17 Hb_000457_120 0.1768240725 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
18 Hb_005183_130 0.1794648152 - - glycogenin, putative [Ricinus communis]
19 Hb_001225_050 0.1797380573 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
20 Hb_002171_050 0.1797509941 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]

Gene co-expression network

sample Hb_004052_190 Hb_004052_190 Hb_000108_180 Hb_000108_180 Hb_004052_190--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_004052_190--Hb_008461_060 Hb_002759_030 Hb_002759_030 Hb_004052_190--Hb_002759_030 Hb_001001_070 Hb_001001_070 Hb_004052_190--Hb_001001_070 Hb_000251_120 Hb_000251_120 Hb_004052_190--Hb_000251_120 Hb_003177_040 Hb_003177_040 Hb_004052_190--Hb_003177_040 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_008461_060--Hb_001001_070 Hb_005305_040 Hb_005305_040 Hb_002759_030--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_000457_120 Hb_000457_120 Hb_002759_030--Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_002759_030--Hb_000928_200 Hb_002759_030--Hb_001001_070 Hb_001001_070--Hb_000251_120 Hb_001001_070--Hb_003177_040 Hb_001001_070--Hb_002081_020 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_003177_040 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0490502 0.066256 0.467485 0.019865 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0150037 0 0.0225731 0.0140512 0.251759

CAGE analysis