Hb_000544_190

Information

Type -
Description -
Location Contig544: 294988-304492
Sequence    

Annotation

kegg
ID rcu:RCOM_0566700
description ARF GTPase activator, putative
nr
ID XP_002530486.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q8LFN9
description Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1
trembl
ID B9SWW7
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_0566700 PE=4 SV=1
Gene Ontology
ID GO:0016874
description probable adp-ribosylation factor gtpase-activating protein agd11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47940: 294907-295392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_190 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_002815_020 0.1211371055 transcription factor TF Family: G2-like Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
3 Hb_000302_320 0.1360715181 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
4 Hb_003054_070 0.1485609154 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
5 Hb_003125_210 0.1542864799 - - Phospholipase C 4 precursor, putative [Ricinus communis]
6 Hb_023308_010 0.1544764481 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
7 Hb_011861_090 0.1548040981 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
8 Hb_005695_100 0.1566736119 - - PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]
9 Hb_000011_280 0.158350305 - - pectinesterase family protein [Populus trichocarpa]
10 Hb_000139_520 0.1630984688 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
11 Hb_001882_080 0.1637977344 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
12 Hb_010164_030 0.1653336296 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_004032_290 0.1654406106 - - protein binding protein, putative [Ricinus communis]
14 Hb_006002_050 0.165576369 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
15 Hb_002073_170 0.167121006 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
16 Hb_036520_030 0.1680249905 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
17 Hb_003466_010 0.1700737918 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
18 Hb_002073_270 0.1709425533 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_004785_220 0.1710586188 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
20 Hb_007259_010 0.1714884868 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000544_190 Hb_000544_190 Hb_002815_020 Hb_002815_020 Hb_000544_190--Hb_002815_020 Hb_000302_320 Hb_000302_320 Hb_000544_190--Hb_000302_320 Hb_003054_070 Hb_003054_070 Hb_000544_190--Hb_003054_070 Hb_003125_210 Hb_003125_210 Hb_000544_190--Hb_003125_210 Hb_023308_010 Hb_023308_010 Hb_000544_190--Hb_023308_010 Hb_011861_090 Hb_011861_090 Hb_000544_190--Hb_011861_090 Hb_002815_020--Hb_003125_210 Hb_001159_230 Hb_001159_230 Hb_002815_020--Hb_001159_230 Hb_006002_050 Hb_006002_050 Hb_002815_020--Hb_006002_050 Hb_004696_010 Hb_004696_010 Hb_002815_020--Hb_004696_010 Hb_012395_110 Hb_012395_110 Hb_002815_020--Hb_012395_110 Hb_002759_030 Hb_002759_030 Hb_000302_320--Hb_002759_030 Hb_000236_290 Hb_000236_290 Hb_000302_320--Hb_000236_290 Hb_000302_320--Hb_011861_090 Hb_002783_280 Hb_002783_280 Hb_000302_320--Hb_002783_280 Hb_000009_280 Hb_000009_280 Hb_000302_320--Hb_000009_280 Hb_010164_030 Hb_010164_030 Hb_003054_070--Hb_010164_030 Hb_001117_050 Hb_001117_050 Hb_003054_070--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_003054_070--Hb_000012_350 Hb_008221_200 Hb_008221_200 Hb_003054_070--Hb_008221_200 Hb_001427_100 Hb_001427_100 Hb_003054_070--Hb_001427_100 Hb_147006_010 Hb_147006_010 Hb_003054_070--Hb_147006_010 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_003125_210--Hb_004696_010 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_154038_040 Hb_154038_040 Hb_023308_010--Hb_154038_040 Hb_000457_120 Hb_000457_120 Hb_023308_010--Hb_000457_120 Hb_004117_020 Hb_004117_020 Hb_023308_010--Hb_004117_020 Hb_001360_020 Hb_001360_020 Hb_023308_010--Hb_001360_020 Hb_000928_200 Hb_000928_200 Hb_023308_010--Hb_000928_200 Hb_001688_030 Hb_001688_030 Hb_023308_010--Hb_001688_030 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_010883_180 Hb_010883_180 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_011861_090--Hb_023308_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108392 0.252778 0.721907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0676231 0.0440596 0.300754

CAGE analysis