Hb_000001_100

Information

Type -
Description -
Location Contig1: 175867-178381
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_100 0.0 - - -
2 Hb_012833_020 0.2317020543 - - -
3 Hb_003073_090 0.2465011383 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
4 Hb_041813_080 0.2822748168 - - -
5 Hb_001300_250 0.2831351093 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
6 Hb_000245_120 0.2836354742 - - hypothetical protein POPTR_0001s18890g [Populus trichocarpa]
7 Hb_002173_050 0.3033368658 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_143769_010 0.3242929113 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
9 Hb_001728_120 0.3342051731 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
10 Hb_181107_010 0.3389390057 - - hypothetical protein, partial [Pseudomonas tolaasii]
11 Hb_000029_430 0.3389390887 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
12 Hb_113614_010 0.3389391377 - - hypothetical protein VITISV_001308 [Vitis vinifera]
13 Hb_001168_090 0.3389391495 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
14 Hb_039316_010 0.3389391631 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
15 Hb_001952_080 0.338939214 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
16 Hb_017184_010 0.3389393386 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
17 Hb_009577_010 0.3389394087 - - -
18 Hb_026405_010 0.3389394778 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
19 Hb_089844_010 0.3389398636 - - -
20 Hb_004989_010 0.338940523 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000001_100 Hb_000001_100 Hb_012833_020 Hb_012833_020 Hb_000001_100--Hb_012833_020 Hb_003073_090 Hb_003073_090 Hb_000001_100--Hb_003073_090 Hb_041813_080 Hb_041813_080 Hb_000001_100--Hb_041813_080 Hb_001300_250 Hb_001300_250 Hb_000001_100--Hb_001300_250 Hb_000245_120 Hb_000245_120 Hb_000001_100--Hb_000245_120 Hb_002173_050 Hb_002173_050 Hb_000001_100--Hb_002173_050 Hb_000566_150 Hb_000566_150 Hb_012833_020--Hb_000566_150 Hb_012833_020--Hb_002173_050 Hb_017358_080 Hb_017358_080 Hb_012833_020--Hb_017358_080 Hb_012833_020--Hb_000245_120 Hb_001366_110 Hb_001366_110 Hb_012833_020--Hb_001366_110 Hb_003073_090--Hb_001300_250 Hb_001728_120 Hb_001728_120 Hb_003073_090--Hb_001728_120 Hb_005687_080 Hb_005687_080 Hb_003073_090--Hb_005687_080 Hb_003073_090--Hb_002173_050 Hb_003073_090--Hb_041813_080 Hb_002073_110 Hb_002073_110 Hb_041813_080--Hb_002073_110 Hb_041813_080--Hb_000245_120 Hb_143769_010 Hb_143769_010 Hb_041813_080--Hb_143769_010 Hb_002534_010 Hb_002534_010 Hb_041813_080--Hb_002534_010 Hb_118034_010 Hb_118034_010 Hb_041813_080--Hb_118034_010 Hb_005742_010 Hb_005742_010 Hb_041813_080--Hb_005742_010 Hb_001300_250--Hb_001728_120 Hb_000834_070 Hb_000834_070 Hb_001300_250--Hb_000834_070 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_003164_010 Hb_003164_010 Hb_001300_250--Hb_003164_010 Hb_000245_120--Hb_005742_010 Hb_000245_120--Hb_002073_110 Hb_006040_050 Hb_006040_050 Hb_000245_120--Hb_006040_050 Hb_027010_030 Hb_027010_030 Hb_000245_120--Hb_027010_030 Hb_000245_120--Hb_143769_010 Hb_002045_080 Hb_002045_080 Hb_002173_050--Hb_002045_080 Hb_000077_360 Hb_000077_360 Hb_002173_050--Hb_000077_360 Hb_001310_090 Hb_001310_090 Hb_002173_050--Hb_001310_090 Hb_003878_220 Hb_003878_220 Hb_002173_050--Hb_003878_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0542007 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0956927 0 0.106195

CAGE analysis