Hb_001300_250

Information

Type -
Description -
Location Contig1300: 203679-206770
Sequence    

Annotation

kegg
ID rcu:RCOM_0556830
description pax transcription activation domain interacting protein, putative
nr
ID KDP21549.1
description hypothetical protein JCGZ_22020 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_250 0.0 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
2 Hb_001728_120 0.1161801601 - - hypothetical protein POPTR_0001s15540g, partial [Populus trichocarpa]
3 Hb_003073_090 0.2046646203 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
4 Hb_000834_070 0.2097935463 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
5 Hb_002073_110 0.2755209152 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003197_010 0.276981703 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003164_010 0.277405608 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_002493_010 0.2791467774 - - -
9 Hb_000001_100 0.2831351093 - - -
10 Hb_033623_040 0.2859338646 - - JHL22C18.10 [Jatropha curcas]
11 Hb_001587_170 0.2860613143 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
12 Hb_001550_050 0.287072764 - - PREDICTED: J domain-containing protein spf31 [Eucalyptus grandis]
13 Hb_041813_080 0.2876779742 - - -
14 Hb_002045_080 0.2958381993 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
15 Hb_001488_190 0.3004631915 - - alpha-amylase, putative [Ricinus communis]
16 Hb_000454_040 0.3030748464 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
17 Hb_004102_010 0.3148691624 - - F-box family protein [Theobroma cacao]
18 Hb_002173_050 0.3161836218 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001310_090 0.3218544036 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
20 Hb_002534_010 0.324635535 - - PREDICTED: expansin-A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001300_250 Hb_001300_250 Hb_001728_120 Hb_001728_120 Hb_001300_250--Hb_001728_120 Hb_003073_090 Hb_003073_090 Hb_001300_250--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_003197_010 Hb_003197_010 Hb_001300_250--Hb_003197_010 Hb_003164_010 Hb_003164_010 Hb_001300_250--Hb_003164_010 Hb_001728_120--Hb_003164_010 Hb_002045_080 Hb_002045_080 Hb_001728_120--Hb_002045_080 Hb_001728_120--Hb_003073_090 Hb_001728_120--Hb_000834_070 Hb_001587_170 Hb_001587_170 Hb_001728_120--Hb_001587_170 Hb_000001_100 Hb_000001_100 Hb_003073_090--Hb_000001_100 Hb_005687_080 Hb_005687_080 Hb_003073_090--Hb_005687_080 Hb_002173_050 Hb_002173_050 Hb_003073_090--Hb_002173_050 Hb_041813_080 Hb_041813_080 Hb_003073_090--Hb_041813_080 Hb_007558_130 Hb_007558_130 Hb_000834_070--Hb_007558_130 Hb_000834_070--Hb_003197_010 Hb_004102_010 Hb_004102_010 Hb_000834_070--Hb_004102_010 Hb_000834_070--Hb_002073_110 Hb_002534_010 Hb_002534_010 Hb_002073_110--Hb_002534_010 Hb_002073_110--Hb_041813_080 Hb_004218_300 Hb_004218_300 Hb_002073_110--Hb_004218_300 Hb_063866_010 Hb_063866_010 Hb_002073_110--Hb_063866_010 Hb_005228_060 Hb_005228_060 Hb_002073_110--Hb_005228_060 Hb_004291_030 Hb_004291_030 Hb_002073_110--Hb_004291_030 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_003197_010--Hb_004102_010 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_017358_070 Hb_017358_070 Hb_003197_010--Hb_017358_070 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_003164_010--Hb_001587_170 Hb_000367_250 Hb_000367_250 Hb_003164_010--Hb_000367_250 Hb_004007_140 Hb_004007_140 Hb_003164_010--Hb_004007_140 Hb_003164_010--Hb_002045_080 Hb_000856_270 Hb_000856_270 Hb_003164_010--Hb_000856_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0139846 0.0133769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0319948 0 0.0356609

CAGE analysis