Hb_005687_080

Information

Type -
Description -
Location Contig5687: 109234-116869
Sequence    

Annotation

kegg
ID rcu:RCOM_0964770
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517788.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVL9
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964770 PE=4 SV=1
Gene Ontology
ID GO:0045552
description tetraketide alpha-pyrone reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005687_080 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_003073_090 0.2618019367 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
3 Hb_002875_060 0.2671891663 - - hypothetical protein L484_023461 [Morus notabilis]
4 Hb_004102_010 0.2840579152 - - F-box family protein [Theobroma cacao]
5 Hb_005337_110 0.2874791957 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_003197_010 0.2989284549 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001229_020 0.2989512518 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_000834_070 0.3032180652 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
9 Hb_000389_050 0.3097458006 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
10 Hb_002150_070 0.3164364636 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
11 Hb_000460_070 0.3251843218 - - luminal binding protein [Gossypium hirsutum]
12 Hb_016564_010 0.3285499647 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
13 Hb_001300_250 0.3294759282 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
14 Hb_183963_010 0.3309676787 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
15 Hb_000465_320 0.3320391046 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
16 Hb_000473_060 0.3328147302 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
17 Hb_001369_700 0.3330655614 - - -
18 Hb_005167_020 0.3351881519 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
19 Hb_000789_120 0.3361858136 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
20 Hb_002171_030 0.3374901608 - - plastid acyl-ACP thioesterase [Vernicia fordii]

Gene co-expression network

sample Hb_005687_080 Hb_005687_080 Hb_003073_090 Hb_003073_090 Hb_005687_080--Hb_003073_090 Hb_002875_060 Hb_002875_060 Hb_005687_080--Hb_002875_060 Hb_004102_010 Hb_004102_010 Hb_005687_080--Hb_004102_010 Hb_005337_110 Hb_005337_110 Hb_005687_080--Hb_005337_110 Hb_003197_010 Hb_003197_010 Hb_005687_080--Hb_003197_010 Hb_001229_020 Hb_001229_020 Hb_005687_080--Hb_001229_020 Hb_001300_250 Hb_001300_250 Hb_003073_090--Hb_001300_250 Hb_001728_120 Hb_001728_120 Hb_003073_090--Hb_001728_120 Hb_000001_100 Hb_000001_100 Hb_003073_090--Hb_000001_100 Hb_002173_050 Hb_002173_050 Hb_003073_090--Hb_002173_050 Hb_041813_080 Hb_041813_080 Hb_003073_090--Hb_041813_080 Hb_001433_130 Hb_001433_130 Hb_002875_060--Hb_001433_130 Hb_000928_010 Hb_000928_010 Hb_002875_060--Hb_000928_010 Hb_001399_010 Hb_001399_010 Hb_002875_060--Hb_001399_010 Hb_000608_170 Hb_000608_170 Hb_002875_060--Hb_000608_170 Hb_005282_020 Hb_005282_020 Hb_002875_060--Hb_005282_020 Hb_000424_040 Hb_000424_040 Hb_002875_060--Hb_000424_040 Hb_004102_010--Hb_003197_010 Hb_000365_370 Hb_000365_370 Hb_004102_010--Hb_000365_370 Hb_017358_070 Hb_017358_070 Hb_004102_010--Hb_017358_070 Hb_000834_070 Hb_000834_070 Hb_004102_010--Hb_000834_070 Hb_000389_050 Hb_000389_050 Hb_004102_010--Hb_000389_050 Hb_000107_510 Hb_000107_510 Hb_004102_010--Hb_000107_510 Hb_169780_010 Hb_169780_010 Hb_005337_110--Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_005337_110--Hb_034658_010 Hb_000017_130 Hb_000017_130 Hb_005337_110--Hb_000017_130 Hb_005337_110--Hb_001300_250 Hb_003952_050 Hb_003952_050 Hb_005337_110--Hb_003952_050 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_003197_010--Hb_017358_070 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_000460_070 Hb_000460_070 Hb_001229_020--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_001229_020--Hb_008698_010 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001621_060 Hb_001621_060 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0435287 0.0930529 0.0560834 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435679 0.0342696 0.190649 0 0.282716

CAGE analysis