Hb_001433_130

Information

Type -
Description -
Location Contig1433: 131870-135128
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01390g
description POPTRDRAFT_570752; hypothetical protein
nr
ID XP_012088962.1
description PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23268 PE=4 SV=1
Gene Ontology
ID GO:0009570
description tetratricopeptide repeat-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11407: 132731-134827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_130 0.0 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
2 Hb_000856_150 0.1629265614 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
3 Hb_001399_010 0.1756421669 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002503_020 0.1783520587 - - Phosphatase 2C family protein, putative [Theobroma cacao]
5 Hb_002875_060 0.1856059119 - - hypothetical protein L484_023461 [Morus notabilis]
6 Hb_001946_330 0.1864232588 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
7 Hb_000853_190 0.1882086523 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_023313_010 0.189095699 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
9 Hb_004128_070 0.1891460481 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
10 Hb_009005_050 0.189169697 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
11 Hb_008725_170 0.1903108676 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
12 Hb_019113_020 0.193574578 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
13 Hb_042202_060 0.1985152558 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
14 Hb_001059_150 0.2024261896 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
15 Hb_004346_030 0.2025058866 - - sucrose phosphate phosphatase, putative [Ricinus communis]
16 Hb_000377_150 0.2026949069 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_011671_460 0.2059561671 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
18 Hb_000125_210 0.2086603511 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
19 Hb_011609_090 0.2101373405 - - protein with unknown function [Ricinus communis]
20 Hb_000140_270 0.2104402049 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001433_130 Hb_001433_130 Hb_000856_150 Hb_000856_150 Hb_001433_130--Hb_000856_150 Hb_001399_010 Hb_001399_010 Hb_001433_130--Hb_001399_010 Hb_002503_020 Hb_002503_020 Hb_001433_130--Hb_002503_020 Hb_002875_060 Hb_002875_060 Hb_001433_130--Hb_002875_060 Hb_001946_330 Hb_001946_330 Hb_001433_130--Hb_001946_330 Hb_000853_190 Hb_000853_190 Hb_001433_130--Hb_000853_190 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000020_120 Hb_000020_120 Hb_000856_150--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000856_150--Hb_001511_070 Hb_002205_130 Hb_002205_130 Hb_000856_150--Hb_002205_130 Hb_000116_430 Hb_000116_430 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020 Hb_001138_060 Hb_001138_060 Hb_001399_010--Hb_001138_060 Hb_004128_070 Hb_004128_070 Hb_001399_010--Hb_004128_070 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_001863_020 Hb_001863_020 Hb_001399_010--Hb_001863_020 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_019113_020 Hb_019113_020 Hb_002503_020--Hb_019113_020 Hb_000125_210 Hb_000125_210 Hb_002503_020--Hb_000125_210 Hb_161175_010 Hb_161175_010 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_002503_020--Hb_000853_190 Hb_000617_200 Hb_000617_200 Hb_002503_020--Hb_000617_200 Hb_000928_010 Hb_000928_010 Hb_002875_060--Hb_000928_010 Hb_002875_060--Hb_001399_010 Hb_000608_170 Hb_000608_170 Hb_002875_060--Hb_000608_170 Hb_005282_020 Hb_005282_020 Hb_002875_060--Hb_005282_020 Hb_000424_040 Hb_000424_040 Hb_002875_060--Hb_000424_040 Hb_000059_050 Hb_000059_050 Hb_001946_330--Hb_000059_050 Hb_001946_330--Hb_000853_190 Hb_003992_170 Hb_003992_170 Hb_001946_330--Hb_003992_170 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_000853_190--Hb_000436_130 Hb_011512_040 Hb_011512_040 Hb_000853_190--Hb_011512_040 Hb_000962_040 Hb_000962_040 Hb_000853_190--Hb_000962_040 Hb_000614_220 Hb_000614_220 Hb_000853_190--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40316 0.718328 4.4766 1.51543 0.548433 1.33432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99817 5.83543 11.5884 2.04668 8.99954

CAGE analysis