Hb_005337_110

Information

Type -
Description -
Location Contig5337: 185416-188058
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003676
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005337_110 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_169780_010 0.2757008083 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
3 Hb_034658_010 0.2872727957 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_005687_080 0.2874791957 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000017_130 0.3206425981 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
6 Hb_001300_250 0.3300938793 - - hypothetical protein JCGZ_22020 [Jatropha curcas]
7 Hb_003952_050 0.3342834818 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_001229_020 0.3382251503 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
9 Hb_041813_080 0.340546159 - - -
10 Hb_162633_010 0.3422428577 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
11 Hb_010977_010 0.3440536952 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000460_070 0.3460052025 - - luminal binding protein [Gossypium hirsutum]
13 Hb_000679_220 0.3461354819 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
14 Hb_007479_030 0.3488172896 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
15 Hb_004128_160 0.3494273593 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
16 Hb_002073_110 0.3513261594 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002150_070 0.3517154446 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
18 Hb_000329_580 0.3520360989 - - malate dehydrogenase, putative [Ricinus communis]
19 Hb_094900_010 0.3550073445 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000834_070 0.3582840763 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_005337_110 Hb_005337_110 Hb_169780_010 Hb_169780_010 Hb_005337_110--Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_005337_110--Hb_034658_010 Hb_005687_080 Hb_005687_080 Hb_005337_110--Hb_005687_080 Hb_000017_130 Hb_000017_130 Hb_005337_110--Hb_000017_130 Hb_001300_250 Hb_001300_250 Hb_005337_110--Hb_001300_250 Hb_003952_050 Hb_003952_050 Hb_005337_110--Hb_003952_050 Hb_169780_010--Hb_034658_010 Hb_162633_010 Hb_162633_010 Hb_169780_010--Hb_162633_010 Hb_141425_010 Hb_141425_010 Hb_169780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_169780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_169780_010--Hb_123396_010 Hb_034658_010--Hb_162633_010 Hb_170973_010 Hb_170973_010 Hb_034658_010--Hb_170973_010 Hb_009268_030 Hb_009268_030 Hb_034658_010--Hb_009268_030 Hb_034658_010--Hb_141425_010 Hb_034658_010--Hb_000987_110 Hb_003073_090 Hb_003073_090 Hb_005687_080--Hb_003073_090 Hb_002875_060 Hb_002875_060 Hb_005687_080--Hb_002875_060 Hb_004102_010 Hb_004102_010 Hb_005687_080--Hb_004102_010 Hb_003197_010 Hb_003197_010 Hb_005687_080--Hb_003197_010 Hb_001229_020 Hb_001229_020 Hb_005687_080--Hb_001229_020 Hb_114861_010 Hb_114861_010 Hb_000017_130--Hb_114861_010 Hb_000110_230 Hb_000110_230 Hb_000017_130--Hb_000110_230 Hb_002304_180 Hb_002304_180 Hb_000017_130--Hb_002304_180 Hb_000012_010 Hb_000012_010 Hb_000017_130--Hb_000012_010 Hb_000189_520 Hb_000189_520 Hb_000017_130--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000017_130--Hb_001484_080 Hb_001728_120 Hb_001728_120 Hb_001300_250--Hb_001728_120 Hb_001300_250--Hb_003073_090 Hb_000834_070 Hb_000834_070 Hb_001300_250--Hb_000834_070 Hb_002073_110 Hb_002073_110 Hb_001300_250--Hb_002073_110 Hb_001300_250--Hb_003197_010 Hb_003164_010 Hb_003164_010 Hb_001300_250--Hb_003164_010 Hb_002686_060 Hb_002686_060 Hb_003952_050--Hb_002686_060 Hb_000890_110 Hb_000890_110 Hb_003952_050--Hb_000890_110 Hb_001369_700 Hb_001369_700 Hb_003952_050--Hb_001369_700 Hb_003952_050--Hb_000012_010 Hb_011053_020 Hb_011053_020 Hb_003952_050--Hb_011053_020 Hb_000038_020 Hb_000038_020 Hb_003952_050--Hb_000038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00586309 0.0109094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0170538 0 0.0255997 0 0.057091

CAGE analysis