Hb_034658_010

Information

Type -
Description -
Location Contig34658: 2544-6929
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034658_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_169780_010 0.0855778088 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
3 Hb_162633_010 0.2293400162 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
4 Hb_170973_010 0.2634449685 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
5 Hb_009268_030 0.2634452544 - - ribosomal protein S7 [Piper cenocladum]
6 Hb_141425_010 0.2735799387 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
7 Hb_000987_110 0.2740698178 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
8 Hb_123396_010 0.2754092389 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
9 Hb_005337_110 0.2872727957 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_004124_010 0.2879164997 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_001124_170 0.299760226 - - putative retrotransposon protein [Phyllostachys edulis]
12 Hb_006933_010 0.3002622883 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002495_050 0.3004388686 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
14 Hb_019656_010 0.3150950924 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_171685_030 0.3183923308 - - URF-1 [Citrullus lanatus]
16 Hb_021374_020 0.3257747393 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
17 Hb_154997_010 0.3277094451 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
18 Hb_008375_020 0.328537538 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
19 Hb_028910_010 0.3307059384 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001172_090 0.33096752 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_034658_010 Hb_034658_010 Hb_169780_010 Hb_169780_010 Hb_034658_010--Hb_169780_010 Hb_162633_010 Hb_162633_010 Hb_034658_010--Hb_162633_010 Hb_170973_010 Hb_170973_010 Hb_034658_010--Hb_170973_010 Hb_009268_030 Hb_009268_030 Hb_034658_010--Hb_009268_030 Hb_141425_010 Hb_141425_010 Hb_034658_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_034658_010--Hb_000987_110 Hb_169780_010--Hb_162633_010 Hb_005337_110 Hb_005337_110 Hb_169780_010--Hb_005337_110 Hb_169780_010--Hb_141425_010 Hb_169780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_169780_010--Hb_123396_010 Hb_001172_090 Hb_001172_090 Hb_162633_010--Hb_001172_090 Hb_002888_010 Hb_002888_010 Hb_162633_010--Hb_002888_010 Hb_007479_030 Hb_007479_030 Hb_162633_010--Hb_007479_030 Hb_010977_010 Hb_010977_010 Hb_162633_010--Hb_010977_010 Hb_170973_010--Hb_009268_030 Hb_170973_010--Hb_141425_010 Hb_170973_010--Hb_000987_110 Hb_170973_010--Hb_123396_010 Hb_004124_010 Hb_004124_010 Hb_170973_010--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_170973_010--Hb_001124_170 Hb_009268_030--Hb_141425_010 Hb_009268_030--Hb_000987_110 Hb_009268_030--Hb_123396_010 Hb_009268_030--Hb_004124_010 Hb_009268_030--Hb_001124_170 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0106685 0 0.0161278 0 0.053986

CAGE analysis