Hb_169780_010

Information

Type -
Description -
Location Contig169780: 33-1741
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026182mg
description hypothetical protein
nr
ID XP_009793870.1
description PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5VHX2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026182mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169780_010 0.0 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
2 Hb_034658_010 0.0855778088 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_162633_010 0.2125975568 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
4 Hb_005337_110 0.2757008083 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_141425_010 0.3041887022 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
6 Hb_000987_110 0.3041946416 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
7 Hb_123396_010 0.3042600348 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
8 Hb_009268_030 0.3126308717 - - ribosomal protein S7 [Piper cenocladum]
9 Hb_170973_010 0.3126564371 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
10 Hb_004124_010 0.3258463548 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_001172_090 0.328572132 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
12 Hb_019656_010 0.3286992126 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004078_030 0.3327856695 - - Putative polyprotein, identical [Solanum demissum]
14 Hb_004019_060 0.3327938868 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_008601_020 0.3327962308 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004989_010 0.3328157989 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
17 Hb_017184_010 0.3330355167 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
18 Hb_001952_080 0.3330759647 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
19 Hb_039316_010 0.3330959549 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
20 Hb_113614_010 0.3331071365 - - hypothetical protein VITISV_001308 [Vitis vinifera]

Gene co-expression network

sample Hb_169780_010 Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_169780_010--Hb_034658_010 Hb_162633_010 Hb_162633_010 Hb_169780_010--Hb_162633_010 Hb_005337_110 Hb_005337_110 Hb_169780_010--Hb_005337_110 Hb_141425_010 Hb_141425_010 Hb_169780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_169780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_169780_010--Hb_123396_010 Hb_034658_010--Hb_162633_010 Hb_170973_010 Hb_170973_010 Hb_034658_010--Hb_170973_010 Hb_009268_030 Hb_009268_030 Hb_034658_010--Hb_009268_030 Hb_034658_010--Hb_141425_010 Hb_034658_010--Hb_000987_110 Hb_001172_090 Hb_001172_090 Hb_162633_010--Hb_001172_090 Hb_002888_010 Hb_002888_010 Hb_162633_010--Hb_002888_010 Hb_007479_030 Hb_007479_030 Hb_162633_010--Hb_007479_030 Hb_010977_010 Hb_010977_010 Hb_162633_010--Hb_010977_010 Hb_005337_110--Hb_034658_010 Hb_005687_080 Hb_005687_080 Hb_005337_110--Hb_005687_080 Hb_000017_130 Hb_000017_130 Hb_005337_110--Hb_000017_130 Hb_001300_250 Hb_001300_250 Hb_005337_110--Hb_001300_250 Hb_003952_050 Hb_003952_050 Hb_005337_110--Hb_003952_050 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_009268_030 Hb_141425_010--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_009268_030 Hb_000987_110--Hb_170973_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_123396_010--Hb_009268_030 Hb_123396_010--Hb_170973_010 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0305261 0 0.0451551 0 0.100568

CAGE analysis